YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114849, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114849, gi|....

Description	E-value	Query Range	Subject Range
gi\|75179828 - gi\|75179828\|ref\|ZP_00699815.1\| COG1414: Transcriptional regulator [Shigella boydii BS512]	280.0	[0..1]	[282..1]
EG12278 - transcriptional repressor of yiaK-S operon / Transcriptional repressor of yiaK-S operon involved wit... EG12278 - transcriptional repressor of yiaK-S operon / Transcriptional repressor of yiaK-S operon involved wit... gi\|89110438, gi\|... - gi\|89110438\|ref\|AP_004218.1\| predicted DNA-binding transcriptional repressor [Escherichia coli str. ... gi\|170018195, gi... - gi\|170018195\|ref\|YP_001723149.1\| IclR family transcriptional regulator [Escherichia coli ATCC 8739],... gi\|75515964 - gi\|75515964\|ref\|ZP_00738082.1\| COG1414: Transcriptional regulator [Escherichia coli 53638] gi\|170083083, gi... - gi\|170083083\|ref\|YP_001732403.1\| DNA-binding transcriptional repressor [Escherichia coli str. K-12 s... YIAJ_ECOLI - HTH-type transcriptional regulator yiaJ (YiaKLMNOPQRS operon repressor) (YiaK-S operon repressor) - ... gi\|75197481 - gi\|75197481\|ref\|ZP_00707551.1\| COG1414: Transcriptional regulator [Escherichia coli HS] gi\|238902664, gi... - gi\|238902664\|ref\|YP_002928460.1\| putative DNA-binding transcriptional repressor [Escherichia coli BW... gi\|124501554, gi... - gi\|124526860\|ref\|ZP_01698742.1\| transcriptional regulator, IclR family [Escherichia coli B], gi\|1245... gi\|226839268, gi... - gi\|254038762\|ref\|ZP_04872818.1\| HTH-type transcriptional regulator yiaJ [Escherichia sp. 1_1_43], gi...	279.0	[0..1]	[282..1]
gi\|254163498, gi... - gi\|254163498\|ref\|YP_003046606.1\| predicted DNA-binding transcriptional repressor [Escherichia coli B... gi\|254290248, gi... - gi\|254290248\|ref\|YP_003055996.1\| predicted DNA-binding transcriptional repressor [Escherichia coli B... gi\|194425175, gi... - gi\|83588572\|ref\|ZP_00927196.1\| COG1414: Transcriptional regulator [Escherichia coli 101-1], gi\|19443... gi\|242379092, gi... - gi\|251786819\|ref\|YP_003001123.1\| hypothetical protein B21_03377 [Escherichia coli BL21], gi\|24237909...	279.0	[0..1]	[282..1]
gi\|75211328, gi\|... - gi\|75211328\|ref\|ZP_00711427.1\| COG1414: Transcriptional regulator [Escherichia coli B171], gi\|194427... gi\|75188338 - gi\|75188338\|ref\|ZP_00701605.1\| COG1414: Transcriptional regulator [Escherichia coli E24377A] gi\|218362903, gi... - gi\|218556135\|ref\|YP_002389048.1\| DNA-binding transcriptional repressor [Escherichia coli IAI1], gi\|2... gi\|75260137, gi\|... - gi\|75260137\|ref\|ZP_00731405.1\| COG1414: Transcriptional regulator [Escherichia coli E22], gi\|1930618... gi\|75237511, gi\|... - gi\|75237511\|ref\|ZP_00721544.1\| COG1414: Transcriptional regulator [Escherichia coli E110019], gi\|193... gi\|190904709, gi... - gi\|75231581\|ref\|ZP_00717939.1\| COG1414: Transcriptional regulator [Escherichia coli B7A], gi\|1911653...	278.0	[0..1]	[282..1]
gi\|191170407, gi... - gi\|75242636\|ref\|ZP_00726380.1\| COG1414: Transcriptional regulator [Escherichia coli F11], gi\|1911704... gi\|227883744, gi... - gi\|227883744\|ref\|ZP_04001549.1\| transcriptional regulator YiaJ [Escherichia coli 83972], gi\|22783932... gi\|91213089, gi\|... - gi\|91213089\|ref\|YP_543075.1\| transcriptional regulator YiaJ [Escherichia coli UTI89], gi\|91074663\|gb... gi\|110643823, gi... - gi\|110643823\|ref\|YP_671553.1\| transcriptional regulator YiaJ [Escherichia coli 536], gi\|110345415\|gb... gi\|26250217, gi\|... - gi\|26250217\|ref\|NP_756257.1\| putative transcriptional regulator YiaJ [Escherichia coli CFT073], gi\|2... gi\|170517851, gi... - gi\|170680133\|ref\|YP_001745862.1\| IclR family transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|215488859, gi... - gi\|215488859\|ref\|YP_002331290.1\| predicted DNA-binding transcriptional repressor [Escherichia coli O... gi\|218367420, gi... - gi\|218560651\|ref\|YP_002393564.1\| DNA-binding transcriptional repressor [Escherichia coli S88], gi\|21... gi\|218429427, gi... - gi\|218691863\|ref\|YP_002400075.1\| DNA-binding transcriptional repressor [Escherichia coli ED1a], gi\|2... gi\|218702340, gi... - gi\|218702340\|ref\|YP_002409969.1\| DNA-binding transcriptional repressor [Escherichia coli IAI39], gi\|... gi\|115514981, gi... - gi\|117625857\|ref\|YP_859180.1\| DNA-binding transcriptional repressor [Escherichia coli APEC O1], gi\|1... gi\|218434306, gi... - gi\|218707209\|ref\|YP_002414728.1\| DNA-binding transcriptional repressor [Escherichia coli UMN026], gi... gi\|226902610, gi... - gi\|237703346\|ref\|ZP_04533827.1\| transcriptional regulator YiaJ [Escherichia sp. 3_2_53FAA], gi\|22690...	278.0	[0..1]	[282..1]
gi\|83571372, gi\|... - gi\|83571372\|ref\|ZP_00922812.1\| COG1414: Transcriptional regulator [Shigella dysenteriae 1012], gi\|19...	277.0	[0..1]	[282..1]
gi\|76589242, gi\|... - gi\|76795434\|ref\|ZP_00777807.1\| regulatory proteins, IclR [Thermoanaerobacter ethanolicus ATCC 33223]... gi\|241902590, gi... - gi\|241902590\|ref\|ZP_04787323.1\| transcriptional regulator, IclR family [Thermoanaerobacter brockii s...	274.0	[0..21]	[273..7]
gi\|77995476, gi\|... - gi\|78043361\|ref\|YP_360107.1\| IclR family transcriptional regulator [Carboxydothermus hydrogenoforman...	273.0	[0..14]	[272..1]
gi\|110807759, gi... - gi\|110807759\|ref\|YP_691279.1\| putative regulator [Shigella flexneri 5 str. 8401], gi\|110617307\|gb\|AB...	266.0	[0..13]	[282..1]
gi\|56379913, gi\|... - gi\|56420071\|ref\|YP_147389.1\| IclR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	264.0	[0..14]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEVMGKKE NEMAQEKERP AGSQSLFRGL MLIEILSNYP NGCPLAHLSE LAGLNKSTVH  60
   61 RLLQGLQSCG YVTTAPAAGS YRLTTKFIAV GQKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2p5vA
Description:	No description for 2p5vA was found.

Predicted Domain #2

Region A:
Residues: [95-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSSLNIIHIA APHLEALNIA TGETINFSSR EDDHAILIYK LEPTTGMLRT RAYIGQHMPL  60
   61 YCSAMGKIYM AFGHPDYVKS YWENHQHEIQ PLTRNTITEL PAMFDELAHI RESGAAMDRE 120
  121 ENELGVSCIA VPVFDIHGRV PYAVSISLST SRLKQVGEKN LLKPLRETAQ AISNELGFTV 180
  181 RDDLGAIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1ysqA
Description:	The crystal structure of transcriptional regulator YaiJ
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits