YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30065002, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30065002, gi|....

Description	E-value	Query Range	Subject Range
gi\|193063769, gi... - gi\|75258234\|ref\|ZP_00729682.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E22], gi\|19... gi\|75236418, gi\|... - gi\|75236418\|ref\|ZP_00720514.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E110019], g... gi\|157158999, gi... - gi\|75188451\|ref\|ZP_00701718.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli E24377A], g...	401.0	[0..1]	[292..1]
gi\|218697416, gi... - gi\|218697416\|ref\|YP_002405083.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli 55989], gi\|218354... gi\|75231036, gi\|... - gi\|75231036\|ref\|ZP_00717471.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli B7A], gi\|19... gi\|218363028, gi... - gi\|218556259\|ref\|YP_002389173.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli IAI1], gi\|2183630...	400.0	[0..1]	[292..1]
gi\|83571493, gi\|... - gi\|83571493\|ref\|ZP_00922933.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Shigella dysenteriae 1012], ...	400.0	[0..1]	[292..1]
gi\|26250434, gi\|... - gi\|26250434\|ref\|NP_756474.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli CFT073], gi\|26110864...	399.0	[0..1]	[292..1]
gi\|74314008, gi\|... - gi\|74314008\|ref\|YP_312427.1\| 2-oxo-3-deoxygalactonate kinase [Shigella sonnei Ss046], gi\|73857485\|gb...	399.0	[0..1]	[292..1]
gi\|89110319, gi\|... - gi\|89110319\|ref\|AP_004099.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli str. K-12 substr. W31... gi\|170083197, gi... - gi\|170083197\|ref\|YP_001732517.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli str. K-12 substr.... gi\|188487317, gi... - gi\|75514243\|ref\|ZP_00736551.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli 53638], gi\|... gi\|124500180, gi... - gi\|124529041\|ref\|ZP_01700187.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli B], gi\|124500180\|... gi\|254038911, gi... - gi\|254038911\|ref\|ZP_04872963.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia sp. 1_1_43], gi\|2268388... gi\|238902784, gi... - gi\|238902784\|ref\|YP_002928580.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli BW2952], gi\|23885... EG11717 - 2-oxo-3-deoxygalactonate kinase / 2-oxo-3-deoxygalactonate kinase DGOK_ECOLI - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) (2-keto-3-deoxy-galactonokinase) (2-oxo-3-deoxygalact... EG11717 - 2-oxo-3-deoxygalactonate kinase / 2-oxo-3-deoxygalactonate kinase gi\|170018070, gi... - gi\|170018070\|ref\|YP_001723024.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli ATCC 8739], gi\|1...	399.0	[0..1]	[292..1]
gi\|75197592, gi\|... - gi\|75197592\|ref\|ZP_00707662.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli HS], gi\|157...	398.0	[0..1]	[292..1]
gi\|194425363, gi... - gi\|83588440\|ref\|ZP_00927064.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli 101-1], gi\|...	397.0	[0..1]	[292..1]
gi\|110644037, gi... - gi\|110644037\|ref\|YP_671767.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli 536], gi\|110345629\|... gi\|75242516, gi\|... - gi\|75242516\|ref\|ZP_00726260.1\| COG3734: 2-keto-3-deoxy-galactonokinase [Escherichia coli F11], gi\|19...	396.0	[0..1]	[292..1]
gi\|218367538, gi... - gi\|218560769\|ref\|YP_002393682.1\| 2-oxo-3-deoxygalactonate kinase [Escherichia coli S88], gi\|21836753... gi\|237703494, gi... - gi\|237703494\|ref\|ZP_04533975.1\| 2-oxo-3-deoxygalactonate kinase DgoK [Escherichia sp. 3_2_53FAA], gi... gi\|91074791, gi\|... - gi\|91213217\|ref\|YP_543203.1\| 2-dehydro-3-deoxygalactonokinase [Escherichia coli UTI89], gi\|91074791\|... gi\|117625970, gi... - gi\|117625970\|ref\|YP_859293.1\| 2-oxo-3-deoxygalactonate kinase DgoK [Escherichia coli APEC O1], gi\|11...	395.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARYIAIDW GSTNLRAWLY QGDHCLESRQ SEAGVTRLNG KSPAAVLAEV TTDWREENTP  60
   61 VVMAGMVGSN VGWKVAPYLS VPARFSSIGE QLTSVGDNIW IIPGLCVSHD DNHNVMRGEE 120
  121 TQLIGARALA PSSLYVMPGT HCKWVQADSQ QINDFRTVMT GELHHLLLNH SLIGAGLPPQ 180
  181 ENSADAFAAG LERGLNAPAI LPQLFEVRAS HVLGTLPREQ VSEFLSGLLI GAEVASMRDY 240
  241 VTHQHAITLV AGTSLTARYQ QAFQAMGCDV AAVAGDTAFQ AGIRSIAHAV AN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2gtdA
Description:	No description for 2gtdA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.678979500792059	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: