YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24054406, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24054406, gi|....

Description	E-value	Query Range	Subject Range
gi\|13364244, gi\|... - gi\|15834022\|ref\|NP_312795.1\| twin-arginine protein translocation system subunit TatC [Escherichia co... gi\|254595236, gi... - gi\|254795836\|ref\|YP_003080673.1\| component of Sec-independent translocase [Escherichia coli O157:H7 ... gi\|253975698, gi... - gi\|254163797\|ref\|YP_003046905.1\| TatABCE protein translocation system subunit [Escherichia coli B st... gi\|254039051, gi... - gi\|254039051\|ref\|ZP_04873102.1\| twin arginine-targeting protein translocase TatC [Escherichia sp. 1_... gi\|254290547, gi... - gi\|254290547\|ref\|YP_003056295.1\| TatABCE protein translocation system subunit [Escherichia coli BL21... gi\|242379383, gi... - gi\|251787110\|ref\|YP_003001414.1\| hypothetical protein B21_03680 [Escherichia coli BL21], gi\|24237938... gi\|238902913, gi... - gi\|238902913\|ref\|YP_002928709.1\| TatABCE protein translocation system subunit [Escherichia coli BW29... gi\|168750344, gi... - gi\|188015409\|gb\|EDU53531.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|189358971, gi... - gi\|189358971\|gb\|EDU77390.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|189365957, gi... - gi\|189365957\|gb\|EDU84373.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|168768125, gi... - gi\|189362639\|gb\|EDU81058.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|187768839, gi... - gi\|187768839\|gb\|EDU32683.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|189001599, gi... - gi\|189001599\|gb\|EDU70585.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|189373389, gi... - gi\|189373389\|gb\|EDU91805.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|189376667, gi... - gi\|189376667\|gb\|EDU95083.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O157:... gi\|124499191, gi... - gi\|124530425\|ref\|ZP_01701083.1\| Sec-independent protein translocase, TatC subunit [Escherichia coli ... EG11479 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... TATC_ECO57 - Sec-independent protein translocase protein TatC OS=Escherichia coli O157:H7 GN=tatC PE=3 SV=2 gi\|15804430, gi\|... - gi\|15804430\|ref\|NP_290470.1\| TatABCE protein translocation system subunit [Escherichia coli O157:H7 ... gi\|193068043, gi... - gi\|75238288\|ref\|ZP_00722287.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|209914576, gi... - gi\|209921317\|ref\|YP_002295401.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|192926666, gi... - gi\|75256238\|ref\|ZP_00727916.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|215267251, gi... - gi\|215489179\|ref\|YP_002331610.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|75209535, gi\|... - gi\|75209535\|ref\|ZP_00709756.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|217320358, gi... - gi\|217324137\|ref\|ZP_03440221.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O... gi\|75230799, gi\|... - gi\|75230799\|ref\|ZP_00717262.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|218556404, gi... - gi\|218556404\|ref\|YP_002389318.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|81247602, gi\|... - gi\|82546191\|ref\|YP_410138.1\| TatABCE protein translocation system subunit [Shigella boydii Sb227], g... gi\|218697559, gi... - gi\|218697559\|ref\|YP_002405226.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|89110182, gi\|... - gi\|89110182\|ref\|AP_003962.1\| TatABCE protein translocation system subunit [Escherichia coli str. K-1... gi\|218371443, gi... - gi\|218701457\|ref\|YP_002409086.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|75512607, gi\|... - gi\|75512607\|ref\|ZP_00735119.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|73857828, gi\|... - gi\|74314351\|ref\|YP_312770.1\| TatABCE protein translocation system subunit [Shigella sonnei Ss046], g... gi\|170022140, gi... - gi\|170022140\|ref\|YP_001727094.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|194434042, gi... - gi\|83569326\|ref\|ZP_00920781.1\| COG0805: Sec-independent protein secretion pathway component TatC [Sh... gi\|169891153, gi... - gi\|170083318\|ref\|YP_001732638.1\| TatABCE protein translocation system subunit [Escherichia coli str.... gi\|170520810, gi... - gi\|170683092\|ref\|YP_001746172.1\| twin arginine-targeting protein translocase TatC [Escherichia coli ... EG11479 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... TATC_ECOLI - Sec-independent protein translocase protein tatC - Escherichia coli gi\|195938130 - gi\|195938130\|ref\|ZP_03083512.1\| TatABCE protein translocation system subunit [Escherichia coli O157:... gi\|75188580, gi\|... - gi\|75188580\|ref\|ZP_00701847.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|208809605, gi... - gi\|208809605\|ref\|ZP_03251942.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O... gi\|75197721, gi\|... - gi\|75197721\|ref\|ZP_00707791.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|208735166, gi... - gi\|208813889\|ref\|ZP_03255218.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O... gi\|194438655, gi... - gi\|83585901\|ref\|ZP_00924540.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|208741043, gi... - gi\|208820920\|ref\|ZP_03261240.1\| twin arginine-targeting protein translocase TatC [Escherichia coli O... gi\|75177804, gi\|... - gi\|75177804\|ref\|ZP_00697869.1\| COG0805: Sec-independent protein secretion pathway component TatC [Sh... gi\|209399791, gi... - gi\|209399791\|ref\|YP_002273357.1\| twin arginine-targeting protein translocase TatC [Escherichia coli ...	277.0	[0..1]	[258..1]
gi\|218429696, gi... - gi\|218692132\|ref\|YP_002400344.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|110345776, gi... - gi\|110644184\|ref\|YP_671914.1\| twin-arginine protein translocation system subunit TatC [Escherichia c... TATC_ECOL6 - Sec-independent protein translocase protein TatC OS=Escherichia coli O6 GN=tatC PE=3 SV=3 gi\|91213387, gi\|... - gi\|91213387\|ref\|YP_543373.1\| TatABCE protein translocation system subunit [Escherichia coli UTI89], ... gi\|75237627, gi\|... - gi\|75237627\|ref\|ZP_00721647.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|226903044, gi... - gi\|237702873\|ref\|ZP_04533354.1\| sec-independent protein twin-arginine translocase subunit tatC [Esch... gi\|227888548, gi... - gi\|227888548\|ref\|ZP_04006353.1\| Sec-independent protein translocase TatC [Escherichia coli 83972], g... gi\|115515242, gi... - gi\|117626118\|ref\|YP_859441.1\| TatABCE protein translocation system subunit [Escherichia coli APEC O1... TATC_ECOL6 - Sec-independent protein translocase protein TatC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... gi\|218560921, gi... - gi\|218560921\|ref\|YP_002393834.1\| twin-arginine protein translocation system subunit TatC [Escherichi...	277.0	[0..1]	[258..1]
gi\|82778981, gi\|... - gi\|82778981\|ref\|YP_405330.1\| TatABCE protein translocation system subunit [Shigella dysenteriae Sd19...	277.0	[0..1]	[258..1]
gi\|62182443, gi\|... - gi\|62182443\|ref\|YP_218860.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|56130086, gi\|... - gi\|56415829\|ref\|YP_152904.1\| twin-arginine protein translocation system subunit TatC [Salmonella ent... gi\|161617098, gi... - gi\|161617098\|ref\|YP_001591063.1\| TatABCE protein translocation system subunit [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=tatC] [protein=TatABCE protein translocation system subunit] [protein_id=YP_005240240.1] [loca... gi\|197263971, gi... - gi\|197263971\|ref\|ZP_03164045.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|197364759, gi... - gi\|197364759\|ref\|YP_002144396.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|198242971, gi... - gi\|198242971\|ref\|YP_002217902.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|200387906, gi... - gi\|200387906\|ref\|ZP_03214518.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194407643, gi... - gi\|194449339\|ref\|YP_002047985.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|194454848, gi... - gi\|194468484\|ref\|ZP_03074468.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194736563, gi... - gi\|194736563\|ref\|YP_002116901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|197248767, gi... - gi\|197248767\|ref\|YP_002148901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|205336498, gi... - gi\|205336498\|gb\|EDZ23262.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205348280, gi... - gi\|205348280\|gb\|EDZ34911.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205340966, gi... - gi\|205340966\|gb\|EDZ27730.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|194446122, gi... - gi\|194446122\|ref\|YP_002043204.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|167553389, gi... - gi\|205322162\|gb\|EDZ10001.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|167993915, gi... - gi\|205328134\|gb\|EDZ14898.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168233910, gi... - gi\|205332097\|gb\|EDZ18861.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168238428, gi... - gi\|197288761\|gb\|EDY28136.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|213614464 - gi\|213614464\|ref\|ZP_03371290.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|16504462, gi\|... - gi\|25312120\|pir\|\|AG0915 sec-independent protein translocase protein [imported] - Salmonella enterica... gi\|213854778 - gi\|213854778\|ref\|ZP_03383018.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|214002448 - gi\|214002448\|ref\|ZP_03413183.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|224585790, gi... - gi\|224585790\|ref\|YP_002639589.1\| sec-independent protein translocase protein [Salmonella enterica su... gi\|16762159 - gi\|16762159\|ref\|NP_457776.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|204320701, gi... - gi\|204930297\|ref\|ZP_03221274.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|205274247, gi... - gi\|205354466\|ref\|YP_002228267.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|6960228, gi\|1... - gi\|6960228\|gb\|AAF33418.1\| 90% identity to E. coli SEC-independent protein translocase protein (TATC)... gi\|206710978, gi... - gi\|207859175\|ref\|YP_002245826.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|29143648, gi\|... - gi\|29143648\|ref\|NP_806990.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|213583369 - gi\|213583369\|ref\|ZP_03365195.1\| twin-arginine protein translocation system subunit TatC [Salmonella ...	272.0	[0..1]	[258..1]
gi\|66043649, gi\|... - gi\|66043649\|ref\|YP_233490.1\| Sec-independent periplasmic protein translocase [Pseudomonas syringae p...	267.0	[0..3]	[255..8]
gi\|71558730, gi\|... - gi\|71738177\|ref\|YP_272668.1\| Sec-independent protein translocase TatC [Pseudomonas syringae pv. phas...	267.0	[0..3]	[255..8]
gi\|194549208, gi... - gi\|84317683\|ref\|ZP_00966121.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|194555033, gi... - gi\|84323844\|ref\|ZP_00971911.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|107104169 - gi\|107104169\|ref\|ZP_01368087.1\| hypothetical protein PaerPA_01005242 [Pseudomonas aeruginosa PACS2] gi\|218894169, gi... - gi\|218894169\|ref\|YP_002443038.1\| transport protein TatC [Pseudomonas aeruginosa LESB58], gi\|21877439... gi\|32044444, gi\|... - gi\|32044444\|ref\|ZP_00141545.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps...	266.0	[0..4]	[254..12]
tr\|Q87UY5\|Q87UY5... - Sec-independent protein translocase protein TatC OS=Pseudomonas syringae pv. tomato (strain DC3000) ... gi\|28872269, gi\|... - gi\|28872269\|ref\|NP_794888.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. toma... gi\|213925788, gi... - gi\|213969417\|ref\|ZP_03397554.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. t...	265.0	[0..3]	[255..8]
gi\|9951363, gi\|1... - gi\|9951363\|gb\|AAG08455.1\|AE004920_5 transport protein TatC [Pseudomonas aeruginosa PAO1], gi\|1560026... gi\|11352718 - pir\|\|A83012 transport protein TatC PA5070 [imported] - Pseudomonas aeruginosa (strain PAO1)	265.0	[0..4]	[254..12]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEDTQPLI THLIELRKRL LNCIIAVIVI FLCLVYFAND IYHLVSAPLI KQLPQGSTMI  60
   61 ATDVASPFFT PIKLTFMVSL ILSAPVILYQ VWAFIAPALY KHERRLVVPL LVSSSLLFYI 120
  121 GMAFAYFVVF PLAFGFLANT APEGVQVSTD IASYLSFVMA LFMAFGVSFE VPVAIVLLCW 180
  181 MGITSSEDLR KKRPYVLVGA FVVGMLLTPP DVFSQTLLAI PMYCLFEIGV FFSRFYVGKG 240
  241 RNREEENDAE AESEKTEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits