YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30043114, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30043114, gi|....

Description	E-value	Query Range	Subject Range
EG11828 - molybdopterin-guanine dinucleotide biosynthesis protein B / Molybdenum cofactor biosynthesis adaptor... gi\|75510866, gi\|... - gi\|75510866\|ref\|ZP_00733660.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc... MOBB_ECOLI - Molybdopterin-guanine dinucleotide biosynthesis protein B - Escherichia coli gi\|75176758, gi\|... - gi\|75176758\|ref\|ZP_00696886.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Shi... gi\|194420901, gi... - gi\|83584511\|ref\|ZP_00923188.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc... gi\|254039065, gi... - gi\|254039065\|ref\|ZP_04873115.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherich... gi\|253326554, gi... - gi\|253775510\|ref\|YP_003038341.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escheric... gi\|242379394, gi... - gi\|251787121\|ref\|YP_003001425.1\| hypothetical protein B21_03691 [Escherichia coli BL21], gi\|24237939... gi\|238861805, gi... - gi\|238902924\|ref\|YP_002928720.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escheric... EG11828 - molybdopterin-guanine dinucleotide biosynthesis protein B / Molybdenum cofactor biosynthesis adaptor...	163.0	[0..1]	[175..1]
gi\|110617007, gi... - gi\|110807459\|ref\|YP_690979.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Shigella fl...	163.0	[0..1]	[175..1]
gi\|192958738, gi... - gi\|75238299\|ref\|ZP_00722298.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc... gi\|75208262, gi\|... - gi\|75208262\|ref\|ZP_00708622.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc... gi\|157158267, gi... - gi\|75188591\|ref\|ZP_00701858.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc...	163.0	[0..1]	[175..1]
gi\|75227230, gi\|... - gi\|75227230\|ref\|ZP_00714028.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc...	162.0	[0..1]	[175..1]
gi\|75255035, gi\|... - gi\|75255035\|ref\|ZP_00726947.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc...	161.0	[0..1]	[175..1]
gi\|71907412, gi\|... - gi\|71907412\|ref\|YP_284999.1\| molybdopterin-guanine dinucleotide biosynthesis MobB region [Dechloromo...	161.0	[0..7]	[171..1]
gi\|115515254, gi... - gi\|117626130\|ref\|YP_859453.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherichia... gi\|91213400, gi\|... - gi\|91213400\|ref\|YP_543386.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherichia ... gi\|237702884, gi... - gi\|237702884\|ref\|ZP_04533365.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherich... gi\|26250617, gi\|... - gi\|26250617\|ref\|NP_756657.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherichia ... gi\|191173881, gi... - gi\|75237822\|ref\|ZP_00721837.1\| COG1763: Molybdopterin-guanine dinucleotide biosynthesis protein [Esc... gi\|110345787, gi... - gi\|110644195\|ref\|YP_671925.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherichia... gi\|215267262, gi... - gi\|215489190\|ref\|YP_002331621.1\| molybdopterin-guanine dinucleotide biosynthesis protein B [Escheric...	160.0	[0..1]	[175..1]
gi\|53803404, gi\|... - gi\|53803404\|ref\|YP_114864.1\| molybdopterin-guanine dinucleotide biosynthesis protein MobB [Methyloco... gi\|23485201 - gi\|23485201\|gb\|EAA20276.1\| molybdopterin guanine dinucleotide synthesis protein B [Plasmodium yoelii... gi\|82913607 - gi\|82913607\|ref\|XP_728711.1\| molybdopterin guanine dinucleotide synthesis protein B [Plasmodium yoel...	160.0	[0..7]	[175..3]
MOBB_ECOLI - (P32125) Molybdopterin-guanine dinucleotide biosynthesis protein B	160.0	[0..2]	[175..1]
gi\|45522258, gi\|... - gi\|91775584\|ref\|YP_545340.1\| cobalamin synthesis protein, P47K [Methylobacillus flagellatus KT], gi\|...	159.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKTMIPLL AFAAWSGTGK TTLLKKLIPA LCARGIRPGL IKHTHHDMDV DKPGKDSYEL  60
   61 RKAGAVQTIV ASQQRWALMT ETPDEEELDL HFLASRMDTS KLDLILVEGF KHEEIAKIVL 120
  121 FRDGAGHRPE ELVIDRHVIA VASDVPLNLD VALLDINDVE GLADFVVEWM QKQNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1np6A
Description:	Molybdopterin-guanine dinucleotide biosynthesis protein MobB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits