YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24054421, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24054421, gi|....

Description	E-value	Query Range	Subject Range
gi\|187430071, gi... - gi\|187733079\|ref\|YP_001882552.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella... gi\|81247613, gi\|... - gi\|82546202\|ref\|YP_410149.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella boy...	163.0	[0..1]	[194..1]
gi\|11513939 - gi\|11513939\|pdb\|1E5K\|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis Protein Mo...	161.0	[0..1]	[194..1]
gi\|170083330, gi... - gi\|170083330\|ref\|YP_001732650.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli str. ... EG11829 - molybdopterin-guanine dinucleotide synthase / Molybdopterin guanine dinucleotide synthesis; chlorate... gi\|89110170, gi\|... - gi\|89110170\|ref\|AP_003950.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli str. K-12... EG11829 - molybdopterin-guanine dinucleotide synthase / Molybdopterin guanine dinucleotide synthesis; chlorate... gi\|254290559, gi... - gi\|254290559\|ref\|YP_003056307.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escheric... gi\|254163809, gi... - gi\|254163809\|ref\|YP_003046917.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escheric... gi\|238861806, gi... - gi\|238902925\|ref\|YP_002928721.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli BW295... gi\|242379395, gi... - gi\|251787122\|ref\|YP_003001426.1\| hypothetical protein B21_03692 [Escherichia coli BL21], gi\|24237939... gi\|194420905, gi... - gi\|194440162\|ref\|ZP_03072209.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|188496382, gi... - gi\|188496382\|ref\|ZP_03003652.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... MOBA_ECOLI - Molybdopterin-guanine dinucleotide biosynthesis protein A (Protein FA) - Escherichia coli	161.0	[0..1]	[194..1]
gi\|73857840, gi\|... - gi\|74314363\|ref\|YP_312782.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella son...	160.0	[0..1]	[194..1]
gi\|208812153, gi... - gi\|208812153\|ref\|ZP_03253482.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|254795848, gi... - gi\|254795848\|ref\|YP_003080685.1\| molybdopterin-guanine dinucleotide synthase [Escherichia coli O157:... gi\|208809279, gi... - gi\|208809279\|ref\|ZP_03251616.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|15834034, gi\|... - gi\|15834034\|ref\|NP_312807.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia ... gi\|195940264 - gi\|195940264\|ref\|ZP_03085646.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|168802805, gi... - gi\|189375318\|gb\|EDU93734.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... MOBA_ECO57 - Molybdenum cofactor guanylyltransferase OS=Escherichia coli O157:H7 GN=mobA PE=3 SV=1 gi\|217324141, gi... - gi\|217324141\|ref\|ZP_03440225.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|209162052, gi... - gi\|209400652\|ref\|YP_002273369.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escheric... gi\|208741376, gi... - gi\|208821253\|ref\|ZP_03261573.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherich... gi\|25517974, gi\|... - pir\|\|D91226 Molybdopterin-guanine dinucleotide biosynthesis protein A [similarity] - Escherichia col... gi\|168765183, gi... - gi\|189364984\|gb\|EDU83400.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|189357111, gi... - gi\|189357111\|gb\|EDU75530.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|168750332, gi... - gi\|188015460\|gb\|EDU53582.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|189373342, gi... - gi\|189373342\|gb\|EDU91758.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|189001535, gi... - gi\|189001535\|gb\|EDU70521.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|187768825, gi... - gi\|187768825\|gb\|EDU32669.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c... gi\|168768137, gi... - gi\|189362737\|gb\|EDU81156.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Escherichia c...	160.0	[0..1]	[194..1]
gi\|83569858 - gi\|83569858\|ref\|ZP_00921307.1\| COG0746: Molybdopterin-guanine dinucleotide biosynthesis protein A [S...	159.0	[0..4]	[194..1]
gi\|82778970, gi\|... - gi\|82778970\|ref\|YP_405319.1\| molybdopterin-guanine dinucleotide biosynthesis protein A [Shigella dys...	159.0	[0..1]	[194..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMTTITGV VLAGGKARRM GGVDKGLLDL NGKPLWQHVA DALKTQLSHV VVNANRHQEI  60
   61 YQAGGLKVIE DSLADYPGPL AGMLSVMQQE AGEWFLFCPC DTPYIPHDLA ARLNHQRKDA 120
  121 PVVWVHDGER DHPTIALVNR AIEPLLLEYL QAGERRVMAF MRLAGGHAVD FSDHKDAFVN 180
  181 VNTPEELARW QEKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1e5kA
Description:	Molybdenum cofactor biosynthesis protein MobA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.140401836041937	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.120443376947599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: