YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24115381, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24115381, gi|....

Description	E-value	Query Range	Subject Range
gi\|74314521, gi\|... - gi\|74314521\|ref\|YP_312940.1\| hypothetical protein SSON_4206 [Shigella sonnei Ss046], gi\|73857998\|gb\|...	225.0	[0..1]	[245..1]
gi\|157069176, gi... - gi\|75197889\|ref\|ZP_00707959.1\| hypothetical protein EcolH_01003729 [Escherichia coli HS], gi\|1571634... gi\|157155115, gi... - gi\|75188755\|ref\|ZP_00702022.1\| hypothetical protein EcolE_01002029 [Escherichia coli E24377A], gi\|15...	220.0	[0..1]	[245..1]
YJBG_ECOLI - Hypothetical protein yjbG precursor - Escherichia coli gi\|170083485, gi... - gi\|170083485\|ref\|YP_001732805.1\| hypothetical protein ECDH10B_4217 [Escherichia coli str. K-12 subst... EG11925 - extracellular polysaccharide export OMA protein / Extracellular polysaccharide export OMA protein gi\|89110749, gi\|... - gi\|89110749\|ref\|AP_004529.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|188496376, gi... - gi\|75514789\|ref\|ZP_00737018.1\| hypothetical protein Ecol5_01001200 [Escherichia coli 53638], gi\|1884... gi\|238860564, gi... - gi\|238903081\|ref\|YP_002928877.1\| hypothetical protein BWG_3684 [Escherichia coli BW2952], gi\|2388605... gi\|226840126, gi... - gi\|254037020\|ref\|ZP_04871097.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684012... EG11925 - extracellular polysaccharide export OMA protein / Extracellular polysaccharide export OMA protein	220.0	[0..1]	[245..1]
gi\|253975865, gi... - gi\|254163964\|ref\|YP_003047072.1\| hypothetical protein ECB_03900 [Escherichia coli B str. REL606], gi... gi\|83587122 - gi\|83587122\|ref\|ZP_00925751.1\| hypothetical protein Ecol1_01001509 [Escherichia coli 101-1] gi\|170021974, gi... - gi\|170021974\|ref\|YP_001726928.1\| hypothetical protein EcolC_4002 [Escherichia coli ATCC 8739], gi\|16... gi\|124498420, gi... - gi\|124531707\|ref\|ZP_01701875.1\| protein of unknown function DUF1017 [Escherichia coli B], gi\|1244984... gi\|253775348, gi... - gi\|254290714\|ref\|YP_003056462.1\| hypothetical protein ECD_03900 [Escherichia coli BL21(DE3)], gi\|253... gi\|251787285, gi... - gi\|251787285\|ref\|YP_003001589.1\| hypothetical protein B21_03860 [Escherichia coli BL21], gi\|24237955...	220.0	[0..1]	[245..1]
gi\|75179608, gi\|... - gi\|75179608\|ref\|ZP_00699612.1\| hypothetical protein SboyB_01000720 [Shigella boydii BS512], gi\|18773...	219.0	[0..1]	[245..1]
gi\|62130306, gi\|... - gi\|62182673\|ref\|YP_219090.1\| hypothetical protein SC4103 [Salmonella enterica subsp. enterica serova... gi\|224470518, gi... - gi\|224585990\|ref\|YP_002639789.1\| hypothetical protein SPC_4285 [Salmonella enterica subsp. enterica ...	219.0	[0..1]	[245..1]
gi\|81243412, gi\|... - gi\|82779264\|ref\|YP_405613.1\| hypothetical protein SDY_4220 [Shigella dysenteriae Sd197], gi\|81243412...	219.0	[0..1]	[245..1]
gi\|217320533, gi... - gi\|217324312\|ref\|ZP_03440396.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|25305817, gi\|... - pir\|\|G86095 hypothetical protein yjbG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518971, gi\|... - gi\|15804621\|ref\|NP_290662.1\| hypothetical protein Z5626 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|15834265, gi\|... - gi\|15834265\|ref\|NP_313038.1\| hypothetical protein ECs5011 [Escherichia coli O157:H7], gi\|13364488\|db... gi\|15834265, gi\|... - gi\|15834265\|ref\|NP_313038.1\| hypothetical protein ECs5011 [Escherichia coli O157:H7 str. Sakai], gi\|...	217.0	[0..1]	[245..1]
gi\|193067904, gi... - gi\|75238567\|ref\|ZP_00722556.1\| hypothetical protein EcolE1_01000880 [Escherichia coli E110019], gi\|1...	217.0	[0..1]	[245..1]
gi\|190902497, gi... - gi\|75229405\|ref\|ZP_00715957.1\| hypothetical protein EcolB7_01002360 [Escherichia coli B7A], gi\|19116... gi\|218697733, gi... - gi\|218697733\|ref\|YP_002405400.1\| hypothetical protein EC55989_4516 [Escherichia coli 55989], gi\|2183...	216.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKQTIVALL LSVGASSVFA AGTVKVFSNG SSEAKTLTGA EHLIDLVGQP RLANSWWPGA  60
   61 VISEELATAA ALRQQQALLT RLAEQGADSS TDDAAAINAL RQQIQALKVT GRQKINLDPD 120
  121 IVRVAERGNP PLQGNYTLWV GPPPSTVTLF GLISHPGNQP FTPGRDVASY LSDQSLLSGA 180
  181 DRSYAWVVYP DGRTQKAPVA YWNKRHVEPM PGSIIYVGLA DSVWSETPDA LNADILQTLT 240
  241 QRIPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2j58A
Description:	No description for 2j58A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits