YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114427, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114427, gi|....

Description	E-value	Query Range	Subject Range
gi\|190907503, gi... - gi\|75240832\|ref\|ZP_00724730.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|227887867, gi... - gi\|227887867\|ref\|ZP_04005672.1\| PTS family mannose/fructose/sorbose porter component IIC [Escherichi... gi\|170519564, gi... - gi\|170681846\|ref\|YP_001745416.1\| PTS system, N-acetylgalactosamine-specific EIIC component [Escheric... gi\|110643384, gi... - gi\|110643384\|ref\|YP_671114.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [Esc... gi\|218701914, gi... - gi\|218701914\|ref\|YP_002409543.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... gi\|218706763, gi... - gi\|218706763\|ref\|YP_002414282.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [...	276.0	[0..1]	[267..1]
gi\|238902243, gi... - gi\|238902243\|ref\|YP_002928039.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|242378684, gi... - gi\|251786411\|ref\|YP_003000715.1\| hypothetical protein B21_02957 [Escherichia coli BL21], gi\|24237868... gi\|253979140, gi... - gi\|254289833\|ref\|YP_003055581.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|253974984, gi... - gi\|254163083\|ref\|YP_003046191.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... EG12770 - N-acetylgalactosamine-specific enzyme IIC component of PTS / Enzyme IIC Nag, PTS system; N-acetylgal... PTPC1_ECOLI, PTP... - (P42910) PTS system, N-acetylgalactosamine-specific IIC component 1 (EIIC-Aga) (N-acetylgalactosamin... gi\|157162624, gi... - gi\|75197090\|ref\|ZP_00707160.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|75227532, gi\|... - gi\|75227532\|ref\|ZP_00714291.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|193067391, gi... - gi\|75239288\|ref\|ZP_00723259.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|124525953, gi... - gi\|124525953\|ref\|ZP_01697958.1\| PTS system, mannose/fructose/sorbose family, IIC subunit [Escherichi... gi\|170018609, gi... - gi\|170018609\|ref\|YP_001723563.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... gi\|89109904, gi\|... - gi\|89109904\|ref\|AP_003684.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escherichia... gi\|170082676, gi... - gi\|170082676\|ref\|YP_001731996.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|209920616, gi... - gi\|209920616\|ref\|YP_002294700.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... gi\|215488462, gi... - gi\|215488462\|ref\|YP_002330893.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... gi\|218353578, gi... - gi\|218696846\|ref\|YP_002404513.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... EG12770 - N-acetylgalactosamine-specific enzyme IIC component of PTS / Enzyme IIC Nag, PTS system; N-acetylgal... gi\|194422243, gi... - gi\|83585780\|ref\|ZP_00924421.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|75187947, gi\|... - gi\|75187947\|ref\|ZP_00701214.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	274.0	[0..1]	[267..1]
gi\|115514563, gi... - gi\|117625439\|ref\|YP_858762.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [Esc... gi\|218366984, gi... - gi\|218560215\|ref\|YP_002393128.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [... gi\|237706104, gi... - gi\|237706104\|ref\|ZP_04536585.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226899144\|gb\|EEH85403.1\| ... gi\|91212561, gi\|... - gi\|91212561\|ref\|YP_542547.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [Esch...	274.0	[0..1]	[267..1]
gi\|26249723, gi\|... - gi\|26249723\|ref\|NP_755763.1\| N-acetylgalactosamine-specific PTS system transporter subunit IIC [Esch...	274.0	[0..1]	[267..1]
gi\|192932351, gi... - gi\|75260069\|ref\|ZP_00731347.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|194414247, gi... - gi\|75211090\|ref\|ZP_00711203.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	273.0	[0..1]	[267..1]
gi\|8895755 - gi\|8895755\|gb\|AAF81091.1\|AF228498_11 AgaC [Escherichia coli]	272.0	[0..1]	[267..1]
gi\|74314512, gi\|... - gi\|74314512\|ref\|YP_312931.1\| putative sorbose-permease PTS system IIC component [Shigella sonnei Ss0...	257.0	[0..3]	[262..2]
gi\|81243500, gi\|... - gi\|82779352\|ref\|YP_405701.1\| sorbose-permease PTS system IIC component [Shigella dysenteriae Sd197],...	256.0	[0..3]	[262..2]
gi\|110617414, gi... - gi\|110807866\|ref\|YP_691386.1\| putative sorbose-permease PTS system IIC component [Shigella flexneri ...	256.0	[0..3]	[262..2]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEITLLQGL SLAALVFVLG IDFWLEALFL FRPIIVCTLT GAILGDIQTG LITGGLTELA  60
   61 FAGLTPAGGV QPPNPIMAGL MTTVIAWSTG VDAKTAIGLG LPFSLLMQYV ILFFYSAFSL 120
  121 FMTKADKCAK EADTAAFSRL NWTTMLIVAS AYAVIAFLCT YLAQGAMQAL VKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [174-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAWLTHGFE VAGGILPAVG FGLLLRVMFK AQYIPYLIAG FLFVCYIRVS NLLPVAVLGA  60
   61 GFAVYEFFNA KSRQQAQPQP VASKNEEEDY SNGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits