YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30042730, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30042730, gi|....

Description	E-value	Query Range	Subject Range
gi\|117625432, gi... - gi\|117625432\|ref\|YP_858755.1\| putative phosphotransferase system enzyme subunit [Escherichia coli AP... gi\|124525960, gi... - gi\|124525960\|ref\|ZP_01697965.1\| phosphotransferase system PTS, sorbose-specific IIC subunit [Escheri... gi\|193061984, gi... - gi\|75260062\|ref\|ZP_00731340.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|168749272, gi... - gi\|188016414\|gb\|EDU54536.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|188488624, gi... - gi\|75513344\|ref\|ZP_00735768.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|189358641, gi... - gi\|189358641\|gb\|EDU77060.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|168762095, gi... - gi\|189367602\|gb\|EDU86018.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189361476, gi... - gi\|189361476\|gb\|EDU79895.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|168773201, gi... - gi\|187770979\|gb\|EDU34823.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189001140, gi... - gi\|189001140\|gb\|EDU70126.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189374215, gi... - gi\|189374215\|gb\|EDU92631.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|189379663, gi... - gi\|189379663\|gb\|EDU98079.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherichia c... gi\|13363485, gi\|... - gi\|15833266\|ref\|NP_312039.1\| N-acetylgalactosamine-specific PTS system enzyme IIC component [Escheri... gi\|83585773, gi\|... - gi\|83585773\|ref\|ZP_00924414.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|209758648, gi... - pir\|\|D91130 hypothetical protein ECs4012 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|157155380, gi... - gi\|75187940\|ref\|ZP_00701207.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|157068297, gi... - gi\|75197083\|ref\|ZP_00707153.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|227887859, gi... - gi\|227887859\|ref\|ZP_04005664.1\| PTS family mannose/fructose/sorbose porter component IIC [Escherichi... gi\|194427711, gi... - gi\|75211083\|ref\|ZP_00711196.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|237706111, gi... - gi\|237706111\|ref\|ZP_04536592.1\| PTS system [Escherichia sp. 3_2_53FAA], gi\|226899151\|gb\|EEH85410.1\| ... gi\|75227539, gi\|... - gi\|75227539\|ref\|ZP_00714298.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|251786404, gi... - gi\|251786404\|ref\|YP_003000708.1\| hypothetical protein B21_02950 [Escherichia coli BL21], gi\|24237867... gi\|75240839, gi\|... - gi\|75240839\|ref\|ZP_00724737.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos... gi\|253323076, gi... - gi\|254289826\|ref\|YP_003055574.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|217327741, gi... - gi\|217327741\|ref\|ZP_03443824.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|253974977, gi... - gi\|254163076\|ref\|YP_003046184.1\| N-acetylgalactosamine-specific enzyme IIC component of PTS [Escheri... gi\|218551574, gi... - gi\|218551574\|ref\|YP_002385366.1\| putative enzyme IIC component of PTS [Escherichia fergusonii ATCC 3... gi\|254594482, gi... - gi\|254795082\|ref\|YP_003079919.1\| putative phosphotransferase system enzyme subunit [Escherichia coli... gi\|218555704, gi... - gi\|218555704\|ref\|YP_002388617.1\| putative enzyme IIC component of PTS [Escherichia coli IAI1], gi\|21... gi\|218366977, gi... - gi\|218560208\|ref\|YP_002393121.1\| putative enzyme IIC component of PTS [Escherichia coli S88], gi\|218... gi\|218428992, gi... - gi\|218691428\|ref\|YP_002399640.1\| putative enzyme IIC component of PTS [Escherichia coli ED1a], gi\|21... gi\|218696839, gi... - gi\|218696839\|ref\|YP_002404506.1\| putative enzyme IIC component of PTS [Escherichia coli 55989], gi\|2... gi\|218701907, gi... - gi\|218701907\|ref\|YP_002409536.1\| putative enzyme IIC component of PTS [Escherichia coli IAI39], gi\|2... gi\|218433853, gi... - gi\|218706756\|ref\|YP_002414275.1\| putative enzyme IIC component of PTS [Escherichia coli UMN026], gi\|... gi\|170018616, gi... - gi\|170018616\|ref\|YP_001723570.1\| phosphotransferase system PTS sorbose-specific IIC subunit [Escheri... gi\|170521961, gi... - gi\|170684243\|ref\|YP_001745409.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escheric... gi\|195938353 - gi\|195938353\|ref\|ZP_03083735.1\| phosphotransferase system PTS sorbose-specific IIC subunit [Escheric... gi\|208726590, gi... - gi\|208806789\|ref\|ZP_03249126.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|208733392, gi... - gi\|208812115\|ref\|ZP_03253444.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|208818182, gi... - gi\|208818182\|ref\|ZP_03258502.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escherich... gi\|209399451, gi... - gi\|209399451\|ref\|YP_002272605.1\| PTS system, N-acetylgalactosamine-specific, IIC component [Escheric... gi\|209913868, gi... - gi\|209920609\|ref\|YP_002294693.1\| PTS system N-acetylgalactosamine-specific IIC component [Escherichi... gi\|91074128, gi\|... - gi\|91212554\|ref\|YP_542540.1\| putative phosphotransferase system enzyme subunit [Escherichia coli UTI... gi\|13363485, gi\|... - gi\|15833266\|ref\|NP_312039.1\| N-acetylgalactosamine-specific PTS system enzyme IIC component [Escheri... gi\|110643377, gi... - gi\|110643377\|ref\|YP_671107.1\| putative phosphotransferase system enzyme subunit (AgaW) [Escherichia ...	266.0	[0..1]	[259..1]
gi\|26110144, gi\|... - gi\|26249716\|ref\|NP_755756.1\| putative phosphotransferase system enzyme subunit [Escherichia coli CFT...	265.0	[0..1]	[259..1]
gi\|193067241, gi... - gi\|75239281\|ref\|ZP_00723252.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	264.0	[0..1]	[259..1]
gi\|8895748 - gi\|8895748\|gb\|AAF81084.1\|AF228498_4 AgaW [Escherichia coli]	256.0	[0..1]	[259..1]
gi\|77972370, gi\|... - gi\|77972370\|ref\|ZP_00827938.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	252.0	[0..1]	[259..1]
gi\|238795207, gi... - gi\|77976436\|ref\|ZP_00831925.1\| COG3715: Phosphotransferase system, mannose/fructose/N-acetylgalactos...	252.0	[0..1]	[259..1]
gi\|90578486, gi\|... - gi\|90578486\|ref\|ZP_01234297.1\| phosphotransferase system, mannose/fructose/N-acetylgalactosamine-spe...	249.0	[0..1]	[259..1]
gi\|37524835, gi\|... - gi\|37524835\|ref\|NP_928179.1\| PTS system, N-acetylgalactosamine-specific IIC component 1 (EIIC-AGA) (...	247.0	[0..5]	[259..2]
gi\|227554467, gi... - gi\|227554467\|ref\|ZP_03984514.1\| PTS family porter component IIC [Enterococcus faecalis HH22], gi\|227... gi\|29344968, gi\|... - gi\|29377501\|ref\|NP_816655.1\| PTS system, IIC component [Enterococcus faecalis V583], gi\|29344968\|gb\|...	247.0	[0..5]	[259..2]
gi\|46916142, gi\|... - gi\|54302718\|ref\|YP_132711.1\| putative N-acetylgalactosamine-specific IID component, PTS system [Phot... gi\|90412261, gi\|... - gi\|90412261\|ref\|ZP_01220266.1\| putative N-acetylgalactosamine-specific IID component, PTS system [Ph...	247.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGDTLELVW  60
   61 MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV 120
  121 MSRC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRMAENADTR GIERVNYLAL LALGTFYFLC AFLPIYFGAE HAKTIIDVLP QRLIDGLGVA  60
   61 GGIMPAIGFA VLLKIMMKNV YIPYFILGFV AATWLKLPVL AIAAAALAMA LIDLLRKSPE 120
  121 PTQPAAQKEE FEDGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits