YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114329, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114329, gi|....

Description	E-value	Query Range	Subject Range
gi\|215266427, gi... - gi\|215488355\|ref\|YP_002330786.1\| NADPH quinone reductase [Escherichia coli O127:H6 str. E2348/69], g... gi\|209913759, gi... - gi\|209920500\|ref\|YP_002294584.1\| modulator of drug activity [Escherichia coli SE11], gi\|209913759\|db... gi\|218362366, gi... - gi\|218555598\|ref\|YP_002388511.1\| NADPH quinone reductase [Escherichia coli IAI1], gi\|218362366\|emb\|C... gi\|217319815, gi... - gi\|217327448\|ref\|ZP_03443531.1\| modulator of drug activity B [Escherichia coli O157:H7 str. TW14588]... gi\|218696734, gi... - gi\|218696734\|ref\|YP_002404401.1\| NADPH quinone reductase [Escherichia coli 55989], gi\|218353466\|emb\|... gi\|218366876, gi... - gi\|218560107\|ref\|YP_002393020.1\| NADPH quinone reductase [Escherichia coli S88], gi\|218366876\|emb\|CA... gi\|218706655, gi... - gi\|218706655\|ref\|YP_002414174.1\| NADPH quinone reductase [Escherichia coli UMN026], gi\|218433752\|emb... gi\|218701802, gi... - gi\|218701802\|ref\|YP_002409431.1\| NADPH quinone reductase [Escherichia coli IAI39], gi\|218371788\|emb\|... gi\|170082571, gi... - gi\|170082571\|ref\|YP_001731891.1\| NADPH quinone reductase [Escherichia coli str. K-12 substr. DH10B],... gi\|170018718, gi... - gi\|170018718\|ref\|YP_001723672.1\| NAD(P)H dehydrogenase (quinone) [Escherichia coli ATCC 8739], gi\|16... gi\|195937169 - gi\|195937169\|ref\|ZP_03082551.1\| NADPH quinone reductase [Escherichia coli O157:H7 str. EC4024] MDAB_ECOL6 - Modulator of drug activity B OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mdaB ... gi\|170682575, gi... - gi\|170682575\|ref\|YP_001745295.1\| modulator of drug activity B [Escherichia coli SMS-3-5], gi\|1705202... MDAB_ECO57 - Modulator of drug activity B OS=Escherichia coli O157:H7 GN=mdaB PE=1 SV=1 gi\|208733149, gi... - gi\|208811872\|ref\|ZP_03253201.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4045],... EG12656 - NADPH quinone reductase / FMN-dependent NADH-quinone reductase; MdaB and YgiN form an enzymatic quin... gi\|208808165, gi... - gi\|208808165\|ref\|ZP_03250502.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4206],... gi\|15803569, gi\|... - gi\|15803569\|ref\|NP_289602.1\| modulator of drug activity B [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|209400260, gi... - gi\|209400260\|ref\|YP_002272501.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4115]... gi\|208819847, gi... - gi\|208819847\|ref\|ZP_03260167.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4042],... gi\|189358728, gi... - gi\|189358728\|gb\|EDU77147.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168747467, gi... - gi\|188017822\|gb\|EDU55944.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4113], gi\|... MDAB_ECOLI - Modulator of drug activity B - Escherichia coli gi\|189363843, gi... - gi\|189363843\|gb\|EDU82262.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189369401, gi... - gi\|189369401\|gb\|EDU87817.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189000535, gi... - gi\|189000535\|gb\|EDU69521.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|187770965, gi... - gi\|187770965\|gb\|EDU34809.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|189379684, gi... - gi\|189379684\|gb\|EDU98100.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|189374219, gi... - gi\|189374219\|gb\|EDU92635.1\| modulator of drug activity B [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|85675831, gi\|... - gi\|89109798\|ref\|AP_003578.1\| NADPH quinone reductase [Escherichia coli str. K-12 substr. W3110], gi\|... gi\|115514460, gi... - gi\|117625336\|ref\|YP_854632.1\| modulator of drug activity B [Escherichia coli APEC O1], gi\|115514460\|... gi\|124526059, gi... - gi\|124526059\|ref\|ZP_01698064.1\| NAD(P)H dehydrogenase (quinone) [Escherichia coli B], gi\|124502163\|g... gi\|157162504, gi... - gi\|75196985\|ref\|ZP_00707055.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|194426178, gi... - gi\|75212334\|ref\|ZP_00712358.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|190902386, gi... - gi\|75229292\|ref\|ZP_00715851.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|192959290, gi... - gi\|75239396\|ref\|ZP_00723367.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|191172482, gi... - gi\|75240518\|ref\|ZP_00724446.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|75259966, gi\|... - gi\|75259966\|ref\|ZP_00731244.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... EG12656 - NADPH quinone reductase / FMN-dependent NADH-quinone reductase; MdaB and YgiN form an enzymatic quin... gi\|75515179, gi\|... - gi\|75515179\|ref\|ZP_00737363.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|82545285, gi\|... - gi\|82545285\|ref\|YP_409232.1\| modulator of drug activity B [Shigella boydii Sb227], gi\|81246696\|gb\|AB... gi\|227835136, gi... - gi\|227887740\|ref\|ZP_04005545.1\| modulator of drug activity B [Escherichia coli 83972], gi\|227835136\|... gi\|237706220, gi... - gi\|237706220\|ref\|ZP_04536701.1\| drug activity modulator B [Escherichia sp. 3_2_53FAA], gi\|226899260\|... gi\|238902141, gi... - gi\|238902141\|ref\|YP_002927937.1\| NADPH quinone reductase [Escherichia coli BW2952], gi\|238861881\|gb\|... gi\|194424295, gi... - gi\|83587531\|ref\|ZP_00926158.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|254594379, gi... - gi\|254794979\|ref\|YP_003079816.1\| NADPH quinone reductase [Escherichia coli O157:H7 str. TW14359], gi... MDAB_ECOL6 - Modulator of drug activity B OS=Escherichia coli O6 GN=mdaB PE=4 SV=1 gi\|75178928, gi\|... - gi\|75178928\|ref\|ZP_00698964.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|157078508, gi... - gi\|75187843\|ref\|ZP_00701110.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|91074021, gi\|... - gi\|91212447\|ref\|YP_542433.1\| modulator of drug activity B [Escherichia coli UTI89], gi\|91074021\|gb\|A... gi\|13363383, gi\|... - gi\|15833164\|ref\|NP_311937.1\| modulator of drug activity B [Escherichia coli O157:H7 str. Sakai], gi\|...	191.0	[0..1]	[193..1]
gi\|82778363, gi\|... - gi\|82778363\|ref\|YP_404712.1\| modulator of drug activity B [Shigella dysenteriae Sd197], gi\|81242511\|...	190.0	[0..1]	[193..1]
gi\|110344860, gi... - gi\|110643268\|ref\|YP_670998.1\| modulator of drug activity B [Escherichia coli 536], gi\|110344860\|gb\|A...	190.0	[0..1]	[193..1]
gi\|254162977, gi... - gi\|254162977\|ref\|YP_003046085.1\| NADPH quinone reductase [Escherichia coli B str. REL606], gi\|253974... gi\|73857043, gi\|... - gi\|74313566\|ref\|YP_311985.1\| modulator of drug activity B [Shigella sonnei Ss046], gi\|73857043\|gb\|AA... gi\|253979034, gi... - gi\|254289727\|ref\|YP_003055475.1\| NADPH quinone reductase [Escherichia coli BL21(DE3)], gi\|253979034\|... gi\|251786307, gi... - gi\|251786307\|ref\|YP_003000611.1\| hypothetical protein B21_02850 [Escherichia coli BL21], gi\|24237858...	189.0	[0..1]	[193..1]
gi\|110806921, gi... - gi\|110806921\|ref\|YP_690441.1\| modulator of drug activity B [Shigella flexneri 5 str. 8401], gi\|11061...	189.0	[0..1]	[193..1]
gi\|7379335, gi\|1... - gi\|7379335\|emb\|CAB83890.1\| hypothetical protein NMA0600 [Neisseria meningitidis Z2491], gi\|218767561... gi\|11253238 - pir\|\|D81979 hypothetical protein NMA0600 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|254671006 - gi\|254671006\|emb\|CBA07775.1\| modulator of drug activity B [Neisseria meningitidis alpha153]	187.0	[0..2]	[193..1]
gi\|46133013 - gi\|46133013\|ref\|ZP_00156448.2\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|145639399, gi... - gi\|145639399\|ref\|ZP_01795004.1\| putative NADPH-quinone reductase, modulator of drug activity B [Haem...	187.0	[0..2]	[193..1]
gi\|11253243 - pir\|\|F81035 modulator of drug activity B NMB1857 [imported] - Neisseria meningitidis (strain MC58 se... gi\|15677692, gi\|... - gi\|7227113\|gb\|AAF42191.1\| modulator of drug activity B [Neisseria meningitidis MC58], gi\|15677692\|re...	187.0	[0..2]	[193..1]
gi\|114793504, gi... - gi\|114793505\|pdb\|2B3D\|B Chain B, Crystal Structure Of Modulator Of Drug Activity B In Complex With F...	186.0	[0..3]	[193..14]
MDAB_HAEIN - Modulator of drug activity B homolog OS=Haemophilus influenzae GN=mdaB PE=4 SV=1 MDAB_HAEIN - Modulator of drug activity B homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	186.0	[0..2]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILIINGA KKFAHSNGQL NDTLTEVADG TLRDLGHDVR IVRADSDYNV KAEVQNFLWA  60
   61 DVVIWQMPGW WMGAPWTVKK YIDDVFTEGH GTLYASDGRT RKDPSKKYGS GSLVQDKKYM 120
  121 LSLTWNAPME AFTEKDQFFH GVGVDGVYLP FHKANQFLGM EPLPTFIAND VIKMPDVPRY 180
  181 TEEYRKHLVE IFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2amjA
Description:	No description for 2amjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits