YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114261, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114261, gi|....

Description	E-value	Query Range	Subject Range
gi\|170521888, gi... - gi\|170684170\|ref\|YP_001745193.1\| hypothetical protein EcSMS35_3210 [Escherichia coli SMS-3-5], gi\|17... gi\|13236681 - gi\|13236681\|gb\|AAK16199.1\| YeeT [Escherichia coli]	148.0	[0..1]	[73..1]
gi\|26110824, gi\|... - gi\|26250394\|ref\|NP_756434.1\| hypothetical protein c4574 [Escherichia coli CFT073], gi\|26110824\|gb\|AA... gi\|253974786, gi... - gi\|254162885\|ref\|YP_003045993.1\| hypothetical protein ECB_02806 [Escherichia coli B str. REL606], gi...	147.0	[0..1]	[73..1]
gi\|195183236 - gi\|195183236\|dbj\|BAG66779.1\| predicted protein [Escherichia coli O111:H-] gi\|75211007, gi\|... - gi\|75211007\|ref\|ZP_00711120.1\| hypothetical protein EcolB_01001804 [Escherichia coli B171], gi\|19442...	147.0	[0..1]	[73..1]
gi\|75212394, gi\|... - gi\|75212394\|ref\|ZP_00712418.1\| hypothetical protein EcolB_01000478 [Escherichia coli B171], gi\|75212... gi\|195183363, gi... - gi\|195183363\|dbj\|BAG66900.1\| predicted protein [Escherichia coli O111:H-], gi\|195183283\|dbj\|BAG66822... gi\|75229699, gi\|... - gi\|75229699\|ref\|ZP_00716232.1\| hypothetical protein EcolB7_01002071 [Escherichia coli B7A], gi\|19116... gi\|75189024, gi\|... - gi\|75189024\|ref\|ZP_00702291.1\| hypothetical protein EcolE_01002302 [Escherichia coli E24377A], gi\|15... gi\|218435044, gi... - gi\|218707947\|ref\|YP_002415466.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli U... gi\|192931327, gi... - gi\|75259060\|ref\|ZP_00730428.1\| hypothetical protein EcolE2_01001324 [Escherichia coli E22], gi\|19306... gi\|82779593, gi\|... - gi\|82779593\|ref\|YP_405942.1\| hypothetical protein SDY_4591 [Shigella dysenteriae Sd197], gi\|81243741... gi\|254692434 - gi\|254692434\|emb\|CAR48077.1\| hypothetical protein [Escherichia coli]	146.0	[0..1]	[73..1]
gi\|218695628, gi... - gi\|218695628\|ref\|YP_002403295.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli 5... gi\|218427630, gi... - gi\|218690066\|ref\|YP_002398278.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli E... gi\|218699407, gi... - gi\|218699407\|ref\|YP_002407036.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli I... gi\|89108822, gi\|... - gi\|89108822\|ref\|AP_002602.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|195939517 - gi\|195939517\|ref\|ZP_03084899.1\| CP4-44 prophage; protein [Escherichia coli O157:H7 str. EC4024] gi\|188495457, gi... - gi\|75514044\|ref\|ZP_00736374.1\| hypothetical protein Ecol5_01001868 [Escherichia coli 53638], gi\|1884... gi\|169889467, gi... - gi\|170081632\|ref\|YP_001730952.1\| CP4-44 prophage; protein [Escherichia coli str. K-12 substr. DH10B]... gi\|193062139, gi... - gi\|75259875\|ref\|ZP_00731153.1\| hypothetical protein EcolE2_01000271 [Escherichia coli E22], gi\|75259... gi\|208731344, gi... - gi\|208817001\|ref\|ZP_03258121.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|75235973, gi\|... - gi\|75235973\|ref\|ZP_00720110.1\| hypothetical protein EcolE1_01002488 [Escherichia coli E110019], gi\|1... gi\|208810267, gi... - gi\|208810267\|ref\|ZP_03252143.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|187733269, gi... - gi\|75177224\|ref\|ZP_00697322.1\| hypothetical protein SboyB_01002925 [Shigella boydii BS512], gi\|18773... gi\|209159631, gi... - gi\|209398231\|ref\|YP_002271175.1\| hypothetical protein ECH74115_2856 [Escherichia coli O157:H7 str. E... gi\|208820503, gi... - gi\|208820503\|ref\|ZP_03260823.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|218365653, gi... - gi\|218558884\|ref\|YP_002391797.1\| conserved hypothetical protein; CP4-44 prophage [Escherichia coli S... gi\|217317411, gi... - gi\|217329643\|ref\|ZP_03445722.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|15802481, gi\|... - gi\|15802481\|ref\|NP_288507.1\| hypothetical protein Z3163 [Escherichia coli O157:H7 EDL933], gi\|125161... gi\|283788470\|ref... - hypothetical protein ROD_49691 [Citrobacter rodentium ICC168] EG13387 - CP4-44 prophage; uncharacterized protein / Function unknown, CP4-44 putative defective prophage YEET_ECOL6 - Uncharacterized protein YeeT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yeeT ... EG13387 - CP4-44 prophage; uncharacterized protein / Function unknown, CP4-44 putative defective prophage gi\|91211290, gi\|... - gi\|91211290\|ref\|YP_541276.1\| hypothetical protein UTI89_C2277 [Escherichia coli UTI89], gi\|91072864\|... gi\|168758440, gi... - gi\|189354740\|gb\|EDU73159.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... YEET_ECOLI - Hypothetical protein yeeT - Escherichia coli gi\|13362272, gi\|... - gi\|15832058\|ref\|NP_310831.1\| hypothetical protein ECs2804 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168751565, gi... - gi\|188014402\|gb\|EDU52524.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|110343808, gi... - gi\|110643999\|ref\|YP_671729.1\| hypothetical protein ECP_3857 [Escherichia coli 536], gi\|110642216\|ref... gi\|189360749, gi... - gi\|189360749\|gb\|EDU79168.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168764087, gi... - gi\|189365861\|gb\|EDU84277.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168784000, gi... - gi\|188998748\|gb\|EDU67734.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767581, gi... - gi\|187767581\|gb\|EDU31425.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... YEET_ECOL6 - Uncharacterized protein yeeT OS=Escherichia coli O6 GN=yeeT PE=3 SV=1 gi\|168801967, gi... - gi\|189375959\|gb\|EDU94375.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... YEET_ECO57 - Uncharacterized protein YeeT OS=Escherichia coli O157:H7 GN=yeeT PE=3 SV=1 gi\|189371213, gi... - gi\|189371213\|gb\|EDU89629.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|227887053, gi... - gi\|227887053\|ref\|ZP_04004858.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783540... gi\|237704008, gi... - gi\|237704460\|ref\|ZP_04534941.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|23770... gi\|238901194, gi... - gi\|238901194\|ref\|YP_002926990.1\| CP4-44 prophage; hypothetical protein [Escherichia coli BW2952], gi... gi\|254793711, gi... - gi\|254793711\|ref\|YP_003078548.1\| CP4-44 prophage; predicted protein [Escherichia coli O157:H7 str. T... gi\|226237409 - gi\|226237409\|dbj\|BAH46931.1\| predicted protein [Escherichia coli O55:H7]	146.0	[0..1]	[73..1]
gi\|28316259 - gi\|28316259\|emb\|CAD66204.1\| hypothetical protein [Escherichia coli] gi\|110342133, gi... - gi\|110640541\|ref\|YP_668269.1\| hypothetical protein ECP_0336 [Escherichia coli 536], gi\|110342133\|gb\|... gi\|190908460, gi... - gi\|75241921\|ref\|ZP_00725740.1\| hypothetical protein EcolF_01001286 [Escherichia coli F11], gi\|191171...	146.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIITRGEAM RIHRQHPASR LFPFCTGKYR WHGSTDTYTG REVQDIPGVL AVFAERRKDS  60
   61 FGPYVRLMSV TLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.39794
Match:	PF06174.2
Description:	No description for PF06174.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits