YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30064280, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30064280, gi|....

Description	E-value	Query Range	Subject Range
gi\|882488\|gb\|AAA... - ORF_f118 gi\|7466548, gi\|8... - gi\|882488\|gb\|AAA69126.1\| ORF_f118, gi\|7466548\|pir\|\|F65081 hypothetical protein in mutY 5' region - E... gi\|82778269, gi\|... - gi\|82778269\|ref\|YP_404618.1\| hypothetical protein SDY_3113 [Shigella dysenteriae Sd197], gi\|81242417... gi\|1789329, gi\|4... - gi\|49176289\|ref\|NP_417434.3\| hypothetical protein b2959 [Escherichia coli K12], gb\|AAC75996.1\| orf, ... gi\|82545418, gi\|... - gi\|82545418\|ref\|YP_409365.1\| hypothetical protein SBO_3031 [Shigella boydii Sb227], gi\|81246829\|gb\|A... gi\|74313632, gi\|... - gi\|74313632\|ref\|YP_312051.1\| hypothetical protein SSON_3237 [Shigella sonnei Ss046], gi\|73857109\|gb\|... gi\|254038010, gi... - gi\|254038010\|ref\|ZP_04872068.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683963...	195.0	[0..1]	[118..1]
gi\|26109789, gi\|... - gi\|26249381\|ref\|NP_755421.1\| Hypothetical protein yggL [Escherichia coli CFT073], gi\|26109789\|gb\|AAN... gi\|91073916, gi\|... - gi\|91212342\|ref\|YP_542328.1\| hypothetical protein YggL [Escherichia coli UTI89], gi\|91073916\|gb\|ABE0... gi\|226899427, gi... - gi\|237706387\|ref\|ZP_04536868.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	194.0	[0..1]	[118..1]
gi\|209759968, gi... - pir\|\|F85953 hypothetical protein yggL [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|13363307 - gi\|13363307\|dbj\|BAB37258.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|12517508, gi\|... - gi\|15803498\|ref\|NP_289531.1\| hypothetical protein Z4304 [Escherichia coli O157:H7 EDL933], gi\|125175... gi\|13363307 - gi\|13363307\|dbj\|BAB37258.1\| hypothetical protein [Escherichia coli O157:H7]	194.0	[0..1]	[118..1]
gi\|126208846, gi... - gi\|126208846\|ref\|YP_001054071.1\| hypothetical protein APL_1382 [Actinobacillus pleuropneumoniae L20]... gi\|32035442 - gi\|32035442\|ref\|ZP_00135408.1\| COG3171: Uncharacterized protein conserved in bacteria [Actinobacillu... gi\|190150702, gi... - gi\|190150702\|ref\|YP_001969227.1\| hypothetical protein APP7_1433 [Actinobacillus pleuropneumoniae ser...	181.0	[0..11]	[118..1]
gi\|77974452 - gi\|77974452\|ref\|ZP_00829992.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia fred...	180.0	[0..11]	[118..1]
gi\|15603181, gi\|... - gi\|15603181\|ref\|NP_246254.1\| hypothetical protein PM1316 [Pasteurella multocida subsp. multocida str...	179.0	[0..11]	[118..1]
gi\|77976487 - gi\|77976487\|ref\|ZP_00831973.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia inte...	178.0	[0..11]	[118..1]
gi\|77956387 - gi\|77956387\|ref\|ZP_00820490.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961508 - gi\|77961508\|ref\|ZP_00825344.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia moll...	178.0	[0..11]	[118..1]
Y341_HAEIN, YGGL... - (P44649) Protein HI0341, Uncharacterized protein HI_0341 OS=Haemophilus influenzae GN=HI_0341 PE=1 S... Y341_HAEIN - Uncharacterized protein HI_0341 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	177.0	[0..11]	[118..1]
gi\|145209567, gi... - gi\|145597871\|ref\|YP_001161947.1\| hypothetical protein YPDSF_0564 [Yersinia pestis Pestoides F], gi\|1... gi\|186896656, gi... - gi\|186896656\|ref\|YP_001873768.1\| hypothetical protein YPTS_3356 [Yersinia pseudotuberculosis PB1/+],... gi\|170023071, gi... - gi\|170023071\|ref\|YP_001719576.1\| hypothetical protein YPK_0822 [Yersinia pseudotuberculosis YPIII], ... gi\|77633209, gi\|... - gi\|77633209\|ref\|ZP_00795353.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153948134, gi... - gi\|77630198\|ref\|ZP_00792784.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|89102073, gi\|... - gi\|89102073\|ref\|ZP_01174738.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25356363 - pir\|\|AF0116 conserved hypothetical protein YPO0950 [imported] - Yersinia pestis (strain CO92) Q666M6\|Q666M6_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|45438098, gi\|... - gi\|45443230\|ref\|NP_994769.1\| hypothetical protein YP_3491 [Yersinia pestis biovar Microtus str. 9100... gi\|166010291, gi... - gi\|166010291\|ref\|ZP_02231189.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|21960281, gi\|... - gi\|22127213\|ref\|NP_670636.1\| hypothetical protein y3337 [Yersinia pestis KIM], gi\|21960281\|gb\|AAM868... gi\|165923189, gi... - gi\|165924989\|ref\|ZP_02220821.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|16121253, gi\|... - gi\|218928121\|ref\|YP_002345996.1\| hypothetical protein YPO0950 [Yersinia pestis CO92], gi\|16121253\|re... gi\|108806311, gi... - gi\|108806311\|ref\|YP_650227.1\| hypothetical protein YPA_0314 [Yersinia pestis Antiqua], gi\|108778224\|... gi\|167400124, gi... - gi\|167400124\|ref\|ZP_02305642.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|51597532, gi\|... - gi\|51597532\|ref\|YP_071723.1\| hypothetical protein YPTB3222 [Yersinia pseudotuberculosis IP 32953], g... gi\|108776956, gi... - gi\|229903771\|ref\|ZP_04518884.1\| hypothetical protein YP516_3575 [Yersinia pestis Nepal516], gi\|22967... gi\|166212795, gi... - gi\|166212795\|ref\|ZP_02238830.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167054319, gi... - gi\|167426716\|ref\|ZP_02318469.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|149290656, gi... - gi\|149367042\|ref\|ZP_01889075.1\| hypothetical protein YPE_2318 [Yersinia pestis CA88-4125], gi\|149290... gi\|167422034, gi... - gi\|167422034\|ref\|ZP_02313787.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229704334, gi... - gi\|229837646\|ref\|ZP_04457808.1\| hypothetical protein YPS_1572 [Yersinia pestis Pestoides A], gi\|2297... gi\|229840870, gi... - gi\|229840870\|ref\|ZP_04461029.1\| hypothetical protein YPH_3221 [Yersinia pestis biovar Orientalis str... gi\|229690879, gi... - gi\|229842569\|ref\|ZP_04462724.1\| hypothetical protein YPF_0910 [Yersinia pestis biovar Orientalis str...	177.0	[0..11]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNVREGEI MAKNRSRRLR KKMHIDEFQE LGFSVAWRFP EGTSEEQIDK IVDDFINEVI  60
   61 EPNKLAFDGS GYLAWEGLIC MQEIGKCTEE HQAIVRKWLE ECKLDEVRTS ELFDVWWD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.431798
Match:	PF04320.5
Description:	No description for PF04320.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.765	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.659	N/A	N/A	d.92.1	Metalloproteases ("zincins"), catalytic domain
View	Download	0.624	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.624	N/A	N/A	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.606	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.606	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.595	N/A	N/A	a.79.1	Antitermination factor NusB
View	Download	0.540	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.491	N/A	N/A	a.1.1	Globin-like
View	Download	0.488	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits