YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24053218, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24053218, gi|....

Description	E-value	Query Range	Subject Range
FUCM_SHIF8 - L-fucose mutarotase OS=Shigella flexneri serotype 5b (strain 8401) GN=fucU PE=3 SV=1 FUCM_ECOUT - L-fucose mutarotase OS=Escherichia coli (strain UTI89 / UPEC) GN=fucU PE=3 SV=1 gi\|15832918, gi\|... - gi\|15832918\|ref\|NP_311691.1\| FucU [Escherichia coli O157:H7 str. Sakai], gi\|13363136\|dbj\|BAB37087.1\|... FUCM_ECOL5 - L-fucose mutarotase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fucU PE=3 SV=1 FUCM_ECOK1 - L-fucose mutarotase OS=Escherichia coli O1:K1 / APEC GN=fucU PE=3 SV=1 gi\|124528769, gi... - gi\|124528769\|ref\|ZP_01699993.1\| RbsD or FucU transport [Escherichia coli B], gi\|124500297\|gb\|EAY4777... FUCU_ECOLI - Fucose operon fucU protein - Escherichia coli gi\|227834615, gi... - gi\|227888346\|ref\|ZP_04006151.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... FUCM_ECOSM - L-fucose mutarotase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fucU PE=3 SV=1 FUCM_ECOLU - L-fucose mutarotase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECOLC - L-fucose mutarotase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fucU PE=3 SV=1 FUCM_ECODH - L-fucose mutarotase OS=Escherichia coli (strain K12 / DH10B) GN=fucU PE=3 SV=1 FUCM_ECO27 - L-fucose mutarotase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fucU PE=3 SV=1 FUCM_ECOSE - L-fucose mutarotase OS=Escherichia coli (strain SE11) GN=fucU PE=3 SV=1 FUCM_ECO8A - L-fucose mutarotase OS=Escherichia coli O8 (strain IAI1) GN=fucU PE=3 SV=1 gi\|217327079, gi... - gi\|217327079\|ref\|ZP_03443162.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. TW14588], ... FUCM_ECO81 - L-fucose mutarotase OS=Escherichia coli O81 (strain ED1a) GN=fucU PE=3 SV=1 FUCM_ECO45 - L-fucose mutarotase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECO7I - L-fucose mutarotase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fucU PE=3 SV=1 FUCM_ECO55 - L-fucose mutarotase OS=Escherichia coli (strain 55989 / EAEC) GN=fucU PE=3 SV=1 FUCM_ECOL6, FUCU... - Fucose operon fucU protein - Escherichia coli O6, L-fucose mutarotase OS=Escherichia coli O6 GN=fucU... gi\|85675623, gi\|... - gi\|89109590\|ref\|AP_003370.1\| L-fucose mutarotase [Escherichia coli str. K-12 substr. W3110], gi\|8567... FUCM_SHIDS - L-fucose mutarotase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fucU PE=3 SV=1 FUCM_SHIBS - L-fucose mutarotase OS=Shigella boydii serotype 4 (strain Sb227) GN=fucU PE=3 SV=1 gi\|191168548, gi... - gi\|75228235\|ref\|ZP_00714892.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|189372224, gi... - gi\|189372224\|gb\|EDU90640.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|75233970, gi\|... - gi\|75233970\|ref\|ZP_00718419.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|189003242, gi... - gi\|189003242\|gb\|EDU72228.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4076], gi\|16... FUCM_ECOHS - L-fucose mutarotase OS=Escherichia coli O9:H4 (strain HS) GN=fucU PE=3 SV=1 gi\|195936408 - gi\|195936408\|ref\|ZP_03081790.1\| L-fucose mutarotase [Escherichia coli O157:H7 str. EC4024] gi\|194415757, gi... - gi\|75212576\|ref\|ZP_00712600.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|168801668, gi... - gi\|189376196\|gb\|EDU94612.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|75511947, gi\|... - gi\|75511947\|ref\|ZP_00734550.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|208814583, gi... - gi\|208814583\|ref\|ZP_03255912.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4045], g... FUCM_SHISS - L-fucose mutarotase OS=Shigella sonnei (strain Ss046) GN=fucU PE=3 SV=1 gi\|208807976, gi... - gi\|208807976\|ref\|ZP_03250313.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4206], g... gi\|190908447, gi... - gi\|75241806\|ref\|ZP_00725625.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... FUCM_ECO5E - L-fucose mutarotase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fucU PE=3 SV=1 gi\|193065084, gi... - gi\|75256857\|ref\|ZP_00728451.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|208820948, gi... - gi\|208820948\|ref\|ZP_03261268.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4042], g... FUCM_SHIB3 - L-fucose mutarotase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fucU PE=3 SV=1 gi\|189354939, gi... - gi\|189354939\|gb\|EDU73358.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4401], gi\|16... FUCM_ECO24 - L-fucose mutarotase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fucU PE=3 SV=1 gi\|188014878, gi... - gi\|188014878\|gb\|EDU53000.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189363690, gi... - gi\|189363690\|gb\|EDU82109.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|194439673, gi... - gi\|83584936\|ref\|ZP_00923592.1\| COG4154: Fucose dissimilation pathway protein FucU [Escherichia coli ... gi\|168764524, gi... - gi\|189365496\|gb\|EDU83912.1\| fucose operon protein FucU [Escherichia coli O157:H7 str. EC4501], gi\|16... sp\|B7UHM0\|FUCM_ECO27 - L-fucose mutarotase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fucU PE=3 SV=1 gi\|237706564, gi... - gi\|237706564\|ref\|ZP_04537045.1\| fucose operon protein FucU [Escherichia sp. 3_2_53FAA], gi\|226899604... FUCM_ECOBW - L-fucose mutarotase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fucU PE=3 SV=1 gi\|242378356, gi... - gi\|251786083\|ref\|YP_003000387.1\| hypothetical protein B21_02616 [Escherichia coli BL21], gi\|24237835... gi\|253772339, gi... - gi\|254289494\|ref\|YP_003055242.1\| L-fucose mutarotase [Escherichia coli BL21(DE3)], gi\|253978801\|gb\|A... gi\|254037858, gi... - gi\|254037858\|ref\|ZP_04871916.1\| fucose operon protein FucU [Escherichia sp. 1_1_43], gi\|226839482\|gb... gi\|254162735, gi... - gi\|254162735\|ref\|YP_003045843.1\| L-fucose mutarotase [Escherichia coli B str. REL606], gi\|253974636\|... gi\|254794745, gi... - gi\|254794745\|ref\|YP_003079582.1\| L-fucose mutarotase [Escherichia coli O157:H7 str. TW14359], gi\|254... EG10355 - L-fucose mutarotase / L-fucose mutarotase FUCM_ECOL6 - L-fucose mutarotase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fucU PE=3 SV=1 EG10355 - L-fucose mutarotase / L-fucose mutarotase FUCM_ECO57 - L-fucose mutarotase OS=Escherichia coli O157:H7 GN=fucU PE=3 SV=1 gi\|15803326, gi\|... - gi\|15803326\|ref\|NP_289359.1\| protein of fucose operon [Escherichia coli O157:H7 EDL933], gi\|12517283...	194.0	[0..1]	[140..1]
gi\|167993476, gi... - gi\|205328448\|gb\|EDZ15212.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|205349306, gi... - gi\|205349306\|gb\|EDZ35937.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=fucU] [protein=putative L-fucose-binding protein] [protein_id=YP_005239099.1] [location=315132... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fucU PE=3 SV=... FUCM_SALTY - L-fucose mutarotase OS=Salmonella typhimurium GN=fucU PE=3 SV=1	193.0	[0..1]	[140..1]
FUCM_SALPB - L-fucose mutarotase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fucU PE=3 SV=1 gi\|238909757 - gi\|238909757\|ref\|ZP_04653594.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALPA - L-fucose mutarotase OS=Salmonella paratyphi A GN=fucU PE=3 SV=1 FUCM_SALCH - L-fucose mutarotase OS=Salmonella choleraesuis GN=fucU PE=3 SV=1 gi\|16761756 - gi\|16761756\|ref\|NP_457373.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica serova... FUCM_SALTI - L-fucose mutarotase OS=Salmonella typhi GN=fucU PE=3 SV=1 gi\|29138873, gi\|... - gi\|29143240\|ref\|NP_806582.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica serova... gi\|194458918, gi... - gi\|194472554\|ref\|ZP_03078538.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALHS - L-fucose mutarotase OS=Salmonella heidelberg (strain SL476) GN=fucU PE=3 SV=1 FUCM_SALNS - L-fucose mutarotase OS=Salmonella newport (strain SL254) GN=fucU PE=3 SV=1 gi\|168820296, gi... - gi\|205342982\|gb\|EDZ29746.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPK - L-fucose mutarotase OS=Salmonella paratyphi A (strain AKU_12601) GN=fucU PE=3 SV=1 gi\|197242924, gi... - gi\|197264669\|ref\|ZP_03164743.1\| fucose operon protein FucU [Salmonella enterica subsp. enterica sero... FUCM_SALA4 - L-fucose mutarotase OS=Salmonella agona (strain SL483) GN=fucU PE=3 SV=1 FUCM_SALSV - L-fucose mutarotase OS=Salmonella schwarzengrund (strain CVM19633) GN=fucU PE=3 SV=1 FUCM_SALCH - L-fucose mutarotase OS=Salmonella choleraesuis (strain SC-B67) GN=fucU PE=3 SV=1 gi\|205324700, gi... - gi\|205324700\|gb\|EDZ12539.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPA - L-fucose mutarotase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=fucU PE=3 SV=1 FUCM_SALPB - L-fucose mutarotase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fucU PE=3 SV=1 gi\|195633284, gi... - gi\|195633284\|gb\|EDX51698.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|205338029, gi... - gi\|205338029\|gb\|EDZ24793.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|168236030, gi... - gi\|197290667\|gb\|EDY30021.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... gi\|168231073, gi... - gi\|205334533\|gb\|EDZ21297.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica serovar... FUCM_SALPC - L-fucose mutarotase OS=Salmonella paratyphi C (strain RKS4594) GN=fucU PE=3 SV=1 FUCM_SALEP - L-fucose mutarotase OS=Salmonella enteritidis PT4 (strain P125109) GN=fucU PE=3 SV=1 gi\|204928179, gi... - gi\|204928179\|ref\|ZP_03219379.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... gi\|200388619, gi... - gi\|200388619\|ref\|ZP_03215231.1\| fuscose operon FucU protein [Salmonella enterica subsp. enterica ser... FUCM_SALDC - L-fucose mutarotase OS=Salmonella dublin (strain CT_02021853) GN=fucU PE=3 SV=1 gi\|214003285 - gi\|214003285\|ref\|ZP_03414020.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213854878 - gi\|213854878\|ref\|ZP_03383118.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213424892 - gi\|213424892\|ref\|ZP_03357642.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser... gi\|213052482 - gi\|213052482\|ref\|ZP_03345360.1\| fuscose operon fucU protein [Salmonella enterica subsp. enterica ser...	192.0	[0..1]	[140..1]
FUCM_ACTP7 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=fucU PE=3 SV=1 gi\|32034309 - gi\|32034309\|ref\|ZP_00134509.1\| COG4154: Fucose dissimilation pathway protein FucU [Actinobacillus pl... FUCM_ACTPJ - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=fucU PE=3 SV=1 FUCM_ACTP2 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fucU PE=3 SV=1	184.0	[0..1]	[140..1]
gi\|37199108, gi\|... - gi\|37680361\|ref\|NP_934970.1\| fucose dissimilation pathway protein FucU [Vibrio vulnificus YJ016], gi...	184.0	[0..1]	[139..12]
gi\|77977919, gi\|... - gi\|77977919\|ref\|ZP_00833356.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	182.0	[0..1]	[139..1]
gi\|75815455 - gi\|75815455\|ref\|ZP_00745963.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... tr\|A0A023PSD9\|A0... - D-ribose pyranase OS=Vibrio cholerae GN=rbsD PE=3 SV=1 gi\|75824939 - gi\|75824939\|ref\|ZP_00754375.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... gi\|75830916, gi\|... - gi\|75830916\|ref\|ZP_00760186.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri...	182.0	[0..1]	[139..15]
gi\|126511758, gi... - gi\|153817716\|ref\|ZP_01970383.1\| ribose ABC transporter protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|125618443 - gi\|125618443\|gb\|EAZ46982.1\| ribose ABC transporter protein [Vibrio cholerae MO10] gi\|153821624, gi... - gi\|229510500\|ref\|ZP_04399980.1\| ribose ABC transport system high affinity permease RbsD [Vibrio chol... gi\|229345405, gi... - gi\|229517369\|ref\|ZP_04406814.1\| ribose ABC transport system high affinity permease RbsD [Vibrio chol... gi\|229371665, gi... - gi\|229605179\|ref\|YP_002875883.1\| ribose ABC transport system high affinity permease RbsD [Vibrio cho... gi\|227010895, gi... - gi\|227811753\|ref\|YP_002811763.1\| ribose ABC transporter protein [Vibrio cholerae M66-2], gi\|22701089... gi\|229506706, gi... - gi\|229506706\|ref\|ZP_04396215.1\| ribose ABC transport system high affinity permease RbsD [Vibrio chol... gi\|11278430 - pir\|\|H82496 ribose ABC transporter protein VCA0127 [imported] - Vibrio cholerae (strain N16961 serog... gi\|121586862, gi... - gi\|121586862\|ref\|ZP_01676643.1\| ribose ABC transporter protein [Vibrio cholerae 2740-80], gi\|1215489... gi\|147672264, gi... - gi\|227119305\|ref\|YP_002821200.1\| ribose ABC transporter protein [Vibrio cholerae O395], gi\|227014755... gi\|124119364, gi... - gi\|153221871\|ref\|ZP_01952736.1\| ribose ABC transporter protein [Vibrio cholerae MAK 757], gi\|1241193... gi\|15600898, gi\|... - gi\|9657515\|gb\|AAF96041.1\| ribose ABC transporter protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|121630627, gi... - gi\|121726993\|ref\|ZP_01680189.1\| ribose ABC transporter protein [Vibrio cholerae V52], gi\|121630627\|g...	182.0	[0..1]	[139..18]
gi\|77973817, gi\|... - gi\|77973817\|ref\|ZP_00829362.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	182.0	[0..1]	[139..1]
gi\|77958705, gi\|... - gi\|77958705\|ref\|ZP_00822734.1\| COG4154: Fucose dissimilation pathway protein FucU [Yersinia bercovie...	182.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTISPLIS PELLKVLAEM GHGDEIIFSD AHFPAHSMEP QVIRADGLLV SDLLQAIIPL  60
   61 FELDSYAPPL VMMAAVEGDT LDPEVERRYR NALSLQAPCP DIIRINRFAF YERAQKAFAI 120
  121 VITGERAKYG NILLKKGVTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	2ob5A
Description:	No description for 2ob5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00199656218015398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: