YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52695957, gi\|...
Organism:	Shigella flexneri
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52695957, gi|....

Description	E-value	Query Range	Subject Range
gi\|81246457, gi\|... - gi\|82545046\|ref\|YP_408993.1\| hypothetical protein SBO_2628 [Shigella boydii Sb227], gi\|81246457\|gb\|A... gi\|187430406, gi... - gi\|75178202\|ref\|ZP_00698261.1\| COG1496: Uncharacterized conserved protein [Shigella boydii BS512], g...	399.0	[0..1]	[243..1]
gi\|89109395, gi\|... - gi\|89109395\|ref\|AP_003175.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|179... gi\|226839294, gi... - gi\|254037670\|ref\|ZP_04871728.1\| yfiH [Escherichia sp. 1_1_43], gi\|226839294\|gb\|EEH71315.1\| yfiH [Esc... gi\|238860363, gi... - gi\|238901754\|ref\|YP_002927550.1\| hypothetical protein BWG_2353 [Escherichia coli BW2952], gi\|2388603... gi\|170082198, gi... - gi\|170082198\|ref\|YP_001731518.1\| hypothetical protein ECDH10B_2761 [Escherichia coli str. K-12 subst... EG12097 - UPF0124 family protein / Function unknown, UPF0124 family EG12097 - UPF0124 family protein / Function unknown, UPF0124 family YFIH_ECOLI - UPF0124 protein yfiH - Escherichia coli gi\|188495600, gi... - gi\|75513199\|ref\|ZP_00735641.1\| COG1496: Uncharacterized conserved protein [Escherichia coli 53638], ...	398.0	[0..1]	[243..1]
gi\|227834800, gi... - gi\|227888160\|ref\|ZP_04005965.1\| protein of hypothetical function DUF152 [Escherichia coli 83972], gi... gi\|26109362, gi\|... - gi\|26248956\|ref\|NP_754996.1\| hypothetical protein c3115 [Escherichia coli CFT073], gi\|26109362\|gb\|AA...	398.0	[0..1]	[243..1]
gi\|124500886, gi... - gi\|124527994\|ref\|ZP_01699347.1\| protein of unknown function DUF152 [Escherichia coli B], gi\|12450088... gi\|169754056, gi... - gi\|170019128\|ref\|YP_001724082.1\| hypothetical protein EcolC_1088 [Escherichia coli ATCC 8739], gi\|16... gi\|194439335, gi... - gi\|83585275\|ref\|ZP_00923924.1\| COG1496: Uncharacterized conserved protein [Escherichia coli 101-1], ...	397.0	[0..1]	[243..1]
gi\|110344348, gi... - gi\|110642756\|ref\|YP_670486.1\| hypothetical protein ECP_2596 [Escherichia coli 536], gi\|110344348\|gb\|... gi\|190905146, gi... - gi\|75236017\|ref\|ZP_00720151.1\| COG1496: Uncharacterized conserved protein [Escherichia coli F11], gi...	396.0	[0..1]	[243..1]
gi\|217327105, gi... - gi\|217327105\|ref\|ZP_03443188.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|195940188 - gi\|195940188\|ref\|ZP_03085570.1\| hypothetical protein EscherichcoliO157_27979 [Escherichia coli O157:... gi\|189376168, gi... - gi\|189376168\|gb\|EDU94584.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|209762692, gi... - pir\|\|F85905 hypothetical protein yfiH [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168789496, gi... - gi\|189370895\|gb\|EDU89311.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189003247, gi... - gi\|189003247\|gb\|EDU72233.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|12517017, gi\|... - gi\|15803117\|ref\|NP_289148.1\| hypothetical protein Z3887 [Escherichia coli O157:H7 EDL933], gi\|125170... gi\|209396881, gi... - gi\|209396881\|ref\|YP_002272066.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 ... gi\|13362927, gi\|... - gi\|15832710\|ref\|NP_311483.1\| hypothetical protein ECs3456 [Escherichia coli O157:H7], gi\|13362927\|db... gi\|208741761, gi... - gi\|208821638\|ref\|ZP_03261958.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|208813817, gi... - gi\|208813817\|ref\|ZP_03255146.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|208808614, gi... - gi\|208808614\|ref\|ZP_03250951.1\| conserved hypothetical protein TIGR00726 [Escherichia coli O157:H7 s... gi\|168752066, gi... - gi\|188014004\|gb\|EDU52126.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168773479, gi... - gi\|187770646\|gb\|EDU34490.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|13362927, gi\|... - gi\|15832710\|ref\|NP_311483.1\| hypothetical protein ECs3456 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189359595, gi... - gi\|189359595\|gb\|EDU78014.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189367252, gi... - gi\|189367252\|gb\|EDU85668.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354553, gi... - gi\|189354553\|gb\|EDU72972.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254794541, gi... - gi\|254794541\|ref\|YP_003079378.1\| hypothetical protein ECSP_3540 [Escherichia coli O157:H7 str. TW143...	396.0	[0..1]	[243..1]
gi\|193064111, gi... - gi\|75258014\|ref\|ZP_00729488.1\| COG1496: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|191169065, gi... - gi\|75227674\|ref\|ZP_00714415.1\| COG1496: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|192954988, gi... - gi\|75214715\|ref\|ZP_00713223.1\| COG1496: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|75208571, gi\|... - gi\|75208571\|ref\|ZP_00708884.1\| COG1496: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|209913329, gi... - gi\|209920070\|ref\|YP_002294154.1\| hypothetical protein ECSE_2879 [Escherichia coli SE11], gi\|20991332...	395.0	[0..1]	[243..1]
gi\|1236632 - gi\|1236632\|gb\|AAA92958.1\| YfiH	395.0	[0..1]	[243..1]
gi\|226899858, gi... - gi\|237706818\|ref\|ZP_04537299.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218559514, gi... - gi\|218559514\|ref\|YP_002392427.1\| hypothetical protein ECS88_2781 [Escherichia coli S88], gi\|21836628... gi\|117624817, gi... - gi\|117624817\|ref\|YP_853730.1\| hypothetical protein APECO1_3937 [Escherichia coli APEC O1], gi\|115513... gi\|91211927, gi\|... - gi\|91211927\|ref\|YP_541913.1\| hypothetical protein UTI89_C2926 [Escherichia coli UTI89], gi\|91073501\|...	395.0	[0..1]	[243..1]
gi\|75196608, gi\|... - gi\|75196608\|ref\|ZP_00706678.1\| COG1496: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	395.0	[0..1]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLIVPQWP LPKGVAACSS TRIGGVSLPP YDSLNLGAHC GDNPDHVEEN RKRLFAAGNL  60
   61 PSKPVWLEQV HGKDVLKLTG EPYASKRADA SYSNTPGTVC AVMTADCLPV LFCNRAGTEV 120
  121 AAVHAGWRGL CAGVLEETVS CFADKPENIL AWLGPAIGPR AFEVGAEVRE AFMAVDAKAS 180
  181 AAFIQHGDKY LADIYQLARQ RLANVGVEQI FGGDRCTYTE NETFFSYRRD KTTGRMASFI 240
  241 WLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1xafA
Description:	Crystal Structure of Hypothetical Protein YfiH from Shigella flexneri 2a str. 2457T
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits