YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24113698, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24113698, gi|....

Description	E-value	Query Range	Subject Range
gi\|253323794, gi... - gi\|254289096\|ref\|YP_003054844.1\| hypothetical protein ECD_02251 [Escherichia coli BL21(DE3)], gi\|253... gi\|242377959, gi... - gi\|251785686\|ref\|YP_002999990.1\| hypothetical protein B21_02211 [Escherichia coli BL21], gi\|24237795... gi\|82544807, gi\|... - gi\|82544807\|ref\|YP_408754.1\| putative transporting ATPase [Shigella boydii Sb227], gi\|81246218\|gb\|AB... gi\|253974236, gi... - gi\|254162335\|ref\|YP_003045443.1\| hypothetical protein ECB_02251 [Escherichia coli B str. REL606], gi... gi\|83588350, gi\|... - gi\|83588350\|ref\|ZP_00926975.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|74312843, gi\|... - gi\|74312843\|ref\|YP_311262.1\| putative transporting ATPase [Shigella sonnei Ss046], gi\|73856320\|gb\|AA...	349.0	[0..1]	[182..1]
EG14116 - Elongation Factor P Lys34 hydroxylase / Elongation Factor P Lys34 hydroxylase gi\|238901501, gi... - gi\|238901501\|ref\|YP_002927297.1\| hypothetical protein BWG_2100 [Escherichia coli BW2952], gi\|2388603... gi\|169889777, gi... - gi\|170081942\|ref\|YP_001731262.1\| hypothetical protein ECDH10B_2488 [Escherichia coli str. K-12 subst... EG14116 - Elongation Factor P Lys34 hydroxylase / Elongation Factor P Lys34 hydroxylase YFCM_ECOLI - Hypothetical protein yfcM - Escherichia coli gi\|85675357, gi\|... - gi\|89109146\|ref\|AP_002926.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|82777737, gi\|... - gi\|82777737\|ref\|YP_404086.1\| putative transporting ATPase [Shigella dysenteriae Sd197], gi\|81241885\|... gi\|75187108, gi\|... - gi\|75187108\|ref\|ZP_00700375.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c...	348.0	[0..1]	[182..1]
gi\|218361649, gi... - gi\|218554881\|ref\|YP_002387794.1\| hypothetical protein ECIAI1_2403 [Escherichia coli IAI1], gi\|218361... gi\|218352657, gi... - gi\|218695925\|ref\|YP_002403592.1\| hypothetical protein EC55989_2570 [Escherichia coli 55989], gi\|2183... gi\|215487539, gi... - gi\|215487539\|ref\|YP_002329970.1\| hypothetical protein E2348C_2466 [Escherichia coli O127:H6 str. E23... gi\|110642530, gi... - gi\|110642530\|ref\|YP_670260.1\| hypothetical protein ECP_2365 [Escherichia coli 536], gi\|110344122\|gb\|... gi\|192931942, gi... - gi\|75259786\|ref\|ZP_00731088.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75243137, gi\|... - gi\|75243137\|ref\|ZP_00726843.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191165545, gi... - gi\|75231407\|ref\|ZP_00717795.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194429289, gi... - gi\|75209507\|ref\|ZP_00709732.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c...	347.0	[0..1]	[182..1]
gi\|83570063, gi\|... - gi\|83570063\|ref\|ZP_00921510.1\| COG3101: Uncharacterized protein conserved in bacteria [Shigella dyse...	347.0	[0..1]	[182..1]
gi\|157067495, gi... - gi\|75196369\|ref\|ZP_00706439.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c...	347.0	[0..1]	[182..1]
gi\|227887386, gi... - gi\|227887386\|ref\|ZP_04005191.1\| transporting ATPase [Escherichia coli 83972], gi\|227835736\|gb\|EEJ462... gi\|26109120, gi\|... - gi\|26248714\|ref\|NP_754754.1\| hypothetical protein c2872 [Escherichia coli CFT073], gi\|26109120\|gb\|AA...	347.0	[0..1]	[182..1]
gi\|187431191, gi... - gi\|75177885\|ref\|ZP_00697947.1\| COG3101: Uncharacterized protein conserved in bacteria [Shigella boyd...	346.0	[0..1]	[182..1]
gi\|189002019, gi... - gi\|189002019\|gb\|EDU71005.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189372924, gi... - gi\|189372924\|gb\|EDU91340.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379019, gi... - gi\|189379019\|gb\|EDU97435.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|195935706 - gi\|195935706\|ref\|ZP_03081088.1\| putative transporting ATPase [Escherichia coli O157:H7 str. EC4024] gi\|168755085, gi... - gi\|189357631\|gb\|EDU76050.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189368232, gi... - gi\|189368232\|gb\|EDU86648.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189362776, gi... - gi\|189362776\|gb\|EDU81195.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168772941, gi... - gi\|187771306\|gb\|EDU35150.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168748182, gi... - gi\|188017339\|gb\|EDU55461.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|25357343, gi\|... - pir\|\|C85874 probable transporting ATPase Z3589 [imported] - Escherichia coli (strain O157:H7, substr... gi\|15802873, gi\|... - gi\|15802873\|ref\|NP_288900.1\| putative transporting ATPase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|13362680, gi\|... - gi\|15832464\|ref\|NP_311237.1\| putative transporting ATPase [Escherichia coli O157:H7], gi\|13362680\|db... gi\|217319257, gi... - gi\|217326890\|ref\|ZP_03442973.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|254794219, gi... - gi\|254794219\|ref\|YP_003079056.1\| hypothetical protein ECSP_3201 [Escherichia coli O157:H7 str. TW143... gi\|208726020, gi... - gi\|208806219\|ref\|ZP_03248556.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|13362680, gi\|... - gi\|15832464\|ref\|NP_311237.1\| putative transporting ATPase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208813938, gi... - gi\|208813938\|ref\|ZP_03255267.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208819181, gi... - gi\|208819181\|ref\|ZP_03259501.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209158004, gi... - gi\|209396604\|ref\|YP_002271736.1\| hypothetical protein ECH74115_3467 [Escherichia coli O157:H7 str. E...	346.0	[0..1]	[182..1]
gi\|75515691, gi\|... - gi\|75515691\|ref\|ZP_00737826.1\| COG3101: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|169754293, gi... - gi\|170019365\|ref\|YP_001724319.1\| hypothetical protein EcolC_1326 [Escherichia coli ATCC 8739], gi\|16... gi\|124526491, gi... - gi\|124526491\|ref\|ZP_01698444.1\| protein of unknown function DUF462 [Escherichia coli B], gi\|12450196...	346.0	[0..1]	[182..1]
gi\|218428050, gi... - gi\|218690486\|ref\|YP_002398698.1\| hypothetical protein ECED1_2790 [Escherichia coli ED1a], gi\|2184280... gi\|91073197, gi\|... - gi\|91211623\|ref\|YP_541609.1\| hypothetical protein UTI89_C2611 [Escherichia coli UTI89], gi\|91073197\|... gi\|226901172, gi... - gi\|237704806\|ref\|ZP_04535287.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|115513640, gi... - gi\|117624516\|ref\|YP_853429.1\| hypothetical protein APECO1_4238 [Escherichia coli APEC O1], gi\|115513...	346.0	[0..1]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTHHYEQL IEIFNSCFAD EFNTRLIKGD DEPIYLPADA EVPYNRIVFA HGFYASAIHE  60
   61 ISHWCIAGKA RRELVDFGYW YCPDGRDAQT QSQFEDVEVK PQAFDWLFCV AAGYPFNVSC 120
  121 DNLEGDFEPD RVVFQRRVHA QVMDYLTNGI PERPARFIKA LQNYYHTPEL TAEQFPWPEA 180
  181 LN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	151.920819
Match:	PF04315.3
Description:	No description for PF04315.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits