YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30063687, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30063687, gi|....

Description	E-value	Query Range	Subject Range
ARND_ECO24 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1...	269.0	[0..1]	[296..1]
gi\|194436355, gi... - gi\|83588242\|ref\|ZP_00926867.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli 101-... YFBH_ECOLI - Hypothetical protein yfbH - Escherichia coli ARND_SHIF8 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella flexneri s... ARND_ECOLC - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... ARND_ECODH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... EG14092 - undecaprenyl phosphate-alpha-L-ara4FN deformylase / Undecaprenyl phosphate-aminoarabinose deformylas... gi\|253974168, gi... - gi\|254162267\|ref\|YP_003045375.1\| hypothetical protein ECB_02182 [Escherichia coli B str. REL606], gi... gi\|254289028, gi... - gi\|254289028\|ref\|YP_003054776.1\| hypothetical protein ECD_02182 [Escherichia coli BL21(DE3)], gi\|253... gi\|251785617, gi... - gi\|251785617\|ref\|YP_002999921.1\| hypothetical protein B21_02141 [Escherichia coli BL21], gi\|24237789... gi\|238860508, gi... - gi\|238901430\|ref\|YP_002927226.1\| hypothetical protein BWG_2029 [Escherichia coli BW2952], gi\|2388605... gi\|124501896, gi... - gi\|124526425\|ref\|ZP_01698378.1\| polysaccharide deacetylase [Escherichia coli B], gi\|124501896\|gb\|EAY... EG14092 - undecaprenyl phosphate-alpha-L-ara4FN deformylase / Undecaprenyl phosphate-aminoarabinose deformylas... gi\|75512732, gi\|... - gi\|75512732\|ref\|ZP_00735234.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli 5363... gi\|192932064, gi... - gi\|75259719\|ref\|ZP_00731021.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli E22]... gi\|85675325, gi\|... - gi\|89109073\|ref\|AP_002853.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... ARND_SHISS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella sonnei (st... gi\|194427092, gi... - gi\|75211664\|ref\|ZP_00711743.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli B171... ARND_ECOHS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O9... gi\|193068229, gi... - gi\|75238044\|ref\|ZP_00722049.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli E110... gi\|191166503, gi... - gi\|75230358\|ref\|ZP_00716848.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli B7A]...	268.0	[0..1]	[296..1]
ARND_SHIB3 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser... ARND_SHIBS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella boydii ser...	268.0	[0..1]	[296..1]
gi\|187771045, gi... - gi\|187771045\|gb\|EDU34889.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189362862, gi... - gi\|189362862\|gb\|EDU81281.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168761303, gi... - gi\|189368316\|gb\|EDU86732.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189357672, gi... - gi\|189357672\|gb\|EDU76091.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|195935635 - gi\|195935635\|ref\|ZP_03081017.1\| hypothetical protein EscherichcoliO157_04112 [Escherichia coli O157:... gi\|168798428, gi... - gi\|189378933\|gb\|EDU97349.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|189372836, gi... - gi\|189372836\|gb\|EDU91252.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|168780113, gi... - gi\|189002099\|gb\|EDU71085.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|188016047, gi... - gi\|188016047\|gb\|EDU54169.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 str.... gi\|15832398, gi\|... - gi\|15832398\|ref\|NP_311171.1\| hypothetical protein ECs3144 [Escherichia coli O157:H7 str. Sakai], gi\|... ARND_ECO5E - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|208738883, gi... - gi\|208818760\|ref\|ZP_03259080.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|254593551, gi... - gi\|254794151\|ref\|YP_003078988.1\| hypothetical protein ECSP_3133 [Escherichia coli O157:H7 str. TW143... gi\|208734222, gi... - gi\|208812945\|ref\|ZP_03254274.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... gi\|208806624, gi... - gi\|208806624\|ref\|ZP_03248961.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ... ARND_ECO57 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... gi\|209765344, gi... - pir\|\|G85865 hypothetical protein Z3514 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15802805, gi\|... - gi\|15802805\|ref\|NP_288832.1\| hypothetical protein Z3514 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|217319669, gi... - gi\|217327302\|ref\|ZP_03443385.1\| polysaccharide deacetylase domain protein [Escherichia coli O157:H7 ...	268.0	[0..1]	[296..1]
ARND_SHIDS - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Shigella dysenteria...	266.0	[0..1]	[296..1]
ARND_ECOUT - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli (s... ARND_ECO45 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O4... sp\|B7UFR8\|ARND_ECO27 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECOK1 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECO27 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O1... ARND_ECOL6 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6... gi\|226901100, gi... - gi\|237704734\|ref\|ZP_04535215.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227835665, gi... - gi\|227887315\|ref\|ZP_04005120.1\| polysaccharide deacetylase domain protein [Escherichia coli 83972], ... ARND_ECOL6 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6...	264.0	[0..1]	[295..1]
ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Photorhabdus lumine... ARND_PHOLL - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase arnD OS=Photorhabdus lumine...	263.0	[0..1]	[293..1]
gi\|75243071, gi\|... - gi\|75243071\|ref\|ZP_00726777.1\| COG0726: Predicted xylanase/chitin deacetylase [Escherichia coli F11]... ARND_ECOL5 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O6... ARND_ECO81 - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Escherichia coli O8...	263.0	[0..1]	[295..1]
ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... YFBH_SALTY - Uncharacterized protein yfbH OS=Salmonella typhimurium GN=yfbH PE=4 SV=1 lcl\|NC_016856.1_... - [gene=STM14_2838] [protein=putative cytoplasmic protein] [protein_id=YP_005238374.1] [location=24596... gi\|197240306, gi... - gi\|197262051\|ref\|ZP_03162125.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp... ARND_SALTY - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella typhimur... gi\|167992636, gi... - gi\|205329220\|gb\|EDZ15984.1\| polysaccharide deacetylase domain protein [Salmonella enterica subsp. en...	262.0	[0..1]	[295..1]
ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae... ARND_SALCH - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD OS=Salmonella cholerae...	262.0	[0..1]	[295..1]

Back

Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVGLRIDV DAFRGTREGV PRLLEILSKH NIQASIFFSV GPDNMGRHLW RLVKPQFLWK  60
   61 MLRSNAASLY GWDILLAGTA WPGKEIGHAN ADIIREAAKH HEVGLHAWDH HAWQARSGNW 120
  121 DRQTMIDDIA RGLRTLEEII GQPVTCSAAA GWRADQKVIE AKEAFHLRYN SDCRGAIPFR 180
  181 PLLESGNPGT AQIPVTLPTW DEVIGRDVKA EDFNGWLLNR ILRDKGTPVY TIHAEVEGCA 240
  241 YQHNFVDLLK RAAQEGVTFC PLSELLSETL PLGQVVRGNI AGREGWLGCQ QIAGSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: