YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30063525, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30063525, gi|....

Description	E-value	Query Range	Subject Range
gi\|74312605, gi\|... - gi\|74312605\|ref\|YP_311024.1\| hypothetical protein SSON_2133 [Shigella sonnei Ss046], gi\|73856082\|gb\|... gi\|82543454, gi\|... - gi\|82543454\|ref\|YP_407401.1\| hypothetical protein SBO_0906 [Shigella boydii Sb227], gi\|81244865\|gb\|A...	177.0	[0..1]	[123..1]
gi\|91072942, gi\|... - gi\|91211368\|ref\|YP_541354.1\| hypothetical protein UTI89_C2355 [Escherichia coli UTI89], gi\|91072942\|... gi\|237704537, gi... - gi\|237704537\|ref\|ZP_04535018.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117624276, gi... - gi\|117624276\|ref\|YP_853189.1\| hypothetical protein APECO1_1170 [Escherichia coli APEC O1], gi\|115513... gi\|26108859, gi\|... - gi\|26248454\|ref\|NP_754494.1\| hypothetical protein c2606 [Escherichia coli CFT073], gi\|26108859\|gb\|AA...	177.0	[0..1]	[123..1]
gi\|25358971, gi\|... - pir\|\|C85835 hypothetical protein Z3249 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12516289, gi\|... - gi\|15802561\|ref\|NP_288588.1\| hypothetical protein Z3249 [Escherichia coli O157:H7 EDL933], gi\|125162... gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7] gi\|13362357 - gi\|13362357\|dbj\|BAB36311.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	177.0	[0..1]	[123..1]
gi\|49176186, gi\|... - gi\|49176186\|ref\|NP_416584.3\| hypothetical protein b2080 [Escherichia coli K12], gb\|AAC75141.1\| orf, ... gi\|7466285 - gi\|7466285\|pir\|\|G64974 hypothetical protein b2080 - Escherichia coli (strain K-12)	176.0	[0..1]	[123..1]
gi\|21958152, gi\|... - gi\|22125279\|ref\|NP_668702.1\| hypothetical protein y1380 [Yersinia pestis KIM], gi\|21958152\|gb\|AAM849... gi\|45442493, gi\|... - gi\|45442493\|ref\|NP_994032.1\| hypothetical protein YP_2720 [Yersinia pestis biovar Microtus str. 9100...	158.0	[0..9]	[123..11]
gi\|218352434, gi... - gi\|218695702\|ref\|YP_002403369.1\| hypothetical protein EC55989_2337 [Escherichia coli 55989], gi\|2183... gi\|218699326, gi... - gi\|218699326\|ref\|YP_002406955.1\| hypothetical protein ECIAI39_0933 [Escherichia coli IAI39], gi\|2183... gi\|215265375, gi... - gi\|215487303\|ref\|YP_002329734.1\| hypothetical protein E2348C_2223 [Escherichia coli O127:H6 str. E23... gi\|251785460, gi... - gi\|251785460\|ref\|YP_002999764.1\| hypothetical protein B21_01977 [Escherichia coli BL21], gi\|24237773... gi\|218554648, gi... - gi\|218554648\|ref\|YP_002387561.1\| hypothetical protein ECIAI1_2157 [Escherichia coli IAI1], gi\|218361... gi\|254162071, gi... - gi\|254162071\|ref\|YP_003045179.1\| hypothetical protein ECB_01985 [Escherichia coli B str. REL606], gi... gi\|253978166, gi... - gi\|254288859\|ref\|YP_003054607.1\| hypothetical protein ECD_01985 [Escherichia coli BL21(DE3)], gi\|253... gi\|218432712, gi... - gi\|218705615\|ref\|YP_002413134.1\| hypothetical protein ECUMN_2418 [Escherichia coli UMN026], gi\|21843... gi\|226237432 - gi\|226237432\|dbj\|BAH46954.1\| predicted protein [Escherichia coli O55:H7] YEGP_SHIFL - UPF0339 protein YegP OS=Shigella flexneri GN=yegP PE=3 SV=2 gi\|170518685, gi... - gi\|170680967\|ref\|YP_001743059.1\| hypothetical protein EcSMS35_0980 [Escherichia coli SMS-3-5], gi\|17... gi\|209919544, gi... - gi\|209919544\|ref\|YP_002293628.1\| hypothetical protein ECSE_2353 [Escherichia coli SE11], gi\|20991280... gi\|170019593, gi... - gi\|170019593\|ref\|YP_001724547.1\| hypothetical protein EcolC_1561 [Escherichia coli ATCC 8739], gi\|16... gi\|110343882, gi... - gi\|110642290\|ref\|YP_670020.1\| hypothetical protein ECP_2120 [Escherichia coli 536], gi\|110343882\|gb\|... gi\|157081239, gi... - gi\|75186877\|ref\|ZP_00700144.1\| COG3422: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|187730526, gi... - gi\|75177199\|ref\|ZP_00697297.1\| COG3422: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|124501721, gi... - gi\|124526665\|ref\|ZP_01698574.1\| protein of unknown function DUF1508 [Escherichia coli B], gi\|1245017... gi\|188491563, gi... - gi\|75514112\|ref\|ZP_00736442.1\| COG3422: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|191169926, gi... - gi\|75242902\|ref\|ZP_00726608.1\| COG3422: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|192957436, gi... - gi\|75236275\|ref\|ZP_00720384.1\| COG3422: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|75196135, gi\|... - gi\|75196135\|ref\|ZP_00706205.1\| COG3422: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	154.0	[0..14]	[123..1]
gi\|82703287, gi\|... - gi\|82703287\|ref\|YP_412853.1\| hypothetical protein Nmul_A2168 [Nitrosospira multiformis ATCC 25196], ...	154.0	[0..14]	[123..1]
gi\|194436122, gi... - gi\|83588072\|ref\|ZP_00926697.1\| COG3422: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|218690138, gi... - gi\|218690138\|ref\|YP_002398350.1\| hypothetical protein ECED1_2426 [Escherichia coli ED1a], gi\|2184277... gi\|218558960, gi... - gi\|218558960\|ref\|YP_002391873.1\| hypothetical protein ECS88_2179 [Escherichia coli S88], gi\|21836572... YEGP_ECOL6 - UPF0339 protein yegP OS=Escherichia coli O6 GN=yegP PE=3 SV=2 YEGP_ECOL6 - UPF0339 protein YegP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yegP PE=3 SV=...	154.0	[0..14]	[123..1]
EG14059 - UPF0339 family protein / Function unknown, UPF0339 family gi\|238901270, gi... - gi\|238901270\|ref\|YP_002927066.1\| hypothetical protein BWG_1870 [Escherichia coli BW2952], gi\|2388629... EG14059 - UPF0339 family protein / Function unknown, UPF0339 family YEGP_ECOLI - UPF0339 protein yegP - Escherichia coli gi\|169889545, gi... - gi\|170081710\|ref\|YP_001731030.1\| hypothetical protein ECDH10B_2232 [Escherichia coli str. K-12 subst... gi\|89108900, gi\|... - gi\|89108900\|ref\|AP_002680.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	153.0	[0..14]	[123..1]
YEGP_ECO57 - UPF0339 protein YegP OS=Escherichia coli O157:H7 GN=yegP PE=3 SV=2 gi\|38704049 - gi\|38704049\|ref\|NP_310915.2\| hypothetical protein ECs2888 [Escherichia coli O157:H7 str. Sakai] gi\|254793865, gi... - gi\|254793865\|ref\|YP_003078702.1\| hypothetical protein ECSP_2837 [Escherichia coli O157:H7 str. TW143... gi\|209162408, gi... - gi\|209401008\|ref\|YP_002271323.1\| hypothetical protein ECH74115_3020 [Escherichia coli O157:H7 str. E... gi\|208820760, gi... - gi\|208820760\|ref\|ZP_03261080.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|217329602, gi... - gi\|217329602\|ref\|ZP_03445681.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|195938274 - gi\|195938274\|ref\|ZP_03083656.1\| hypothetical protein EscherichcoliO157_17886 [Escherichia coli O157:... gi\|168799034, gi... - gi\|189378500\|gb\|EDU96916.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208817212, gi... - gi\|208817212\|ref\|ZP_03258304.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208728231, gi... - gi\|208808430\|ref\|ZP_03250767.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168775468, gi... - gi\|187768970\|gb\|EDU32814.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189361257, gi... - gi\|189361257\|gb\|EDU79676.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189371580, gi... - gi\|189371580\|gb\|EDU89996.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189000104, gi... - gi\|189000104\|gb\|EDU69090.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168750407, gi... - gi\|188015380\|gb\|EDU53502.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189367838, gi... - gi\|189367838\|gb\|EDU86254.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189355137, gi... - gi\|189355137\|gb\|EDU73556.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	153.0	[0..14]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSISNFNQ GVIMAGWFEL SKSSDNQFRF VLKAGNGETI LTSELYTSKA SAEKGIASVR  60
   61 SNSPQEERYE KKTASNGKFY FNLKAANHQI IGSSQMYATA QSRETGIASV KANGTSQTVK 120
  121 DNT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits