YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24113330, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	60 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24113330, gi|....

Description	E-value	Query Range	Subject Range
gi\|16420522 - gi\|16420522\|gb\|AAL20898.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	106.0	[0..1]	[59..21]
gi\|197093503, gi... - gi\|197362026\|ref\|YP_002141663.1\| hypothetical protein SSPA0822 [Salmonella enterica subsp. enterica ... gi\|56127357, gi\|... - gi\|56413100\|ref\|YP_150175.1\| hypothetical protein SPA0882 [Salmonella enterica subsp. enterica serov... gi\|25512302, gi\|... - gi\|25512302\|pir\|\|AD0754 conserved hypothetical protein STY2195 [imported] - Salmonella enterica subs... gi\|29137004, gi\|... - gi\|29141377\|ref\|NP_804719.1\| hypothetical protein t0890 [Salmonella enterica subsp. enterica serovar... gi\|16760931 - gi\|16760931\|ref\|NP_456548.1\| hypothetical protein STY2195 [Salmonella enterica subsp. enterica serov...	106.0	[0..1]	[59..21]
gi\|62128195, gi\|... - gi\|62180562\|ref\|YP_216979.1\| hypothetical protein SC1992 [Salmonella enterica subsp. enterica serova...	106.0	[0..1]	[59..21]
YODC_ECOLI - Hypothetical protein yodC - Escherichia coli YODC_ECO57 - Uncharacterized protein YodC OS=Escherichia coli O157:H7 GN=yodC PE=4 SV=1 gi\|238901161, gi... - gi\|238901161\|ref\|YP_002926957.1\| hypothetical protein BWG_1761 [Escherichia coli BW2952], gi\|2388628... EG14307 - uncharacterized protein / Function unknown gi\|253773095, gi... - gi\|253773095\|ref\|YP_003035926.1\| hypothetical protein ECBD_1689 [Escherichia coli BL21(DE3)], gi\|253... gi\|254593007, gi... - gi\|254793607\|ref\|YP_003078444.1\| hypothetical protein ECSP_2561 [Escherichia coli O157:H7 str. TW143... gi\|15802391, gi\|... - gi\|15802391\|ref\|NP_288417.1\| hypothetical protein Z3048 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|170682491, gi... - gi\|170682491\|ref\|YP_001743289.1\| hypothetical protein EcSMS35_1228 [Escherichia coli SMS-3-5], gi\|17... gi\|169889435, gi... - gi\|170081600\|ref\|YP_001730920.1\| hypothetical protein ECDH10B_2099 [Escherichia coli str. K-12 subst... gi\|215487155, gi... - gi\|215487155\|ref\|YP_002329586.1\| hypothetical protein E2348C_2070 [Escherichia coli O127:H6 str. E23... gi\|195939263 - gi\|195939263\|ref\|ZP_03084645.1\| hypothetical protein EscherichcoliO157_23053 [Escherichia coli O157:... gi\|73855973, gi\|... - gi\|74312496\|ref\|YP_310915.1\| hypothetical protein SSON_2014 [Shigella sonnei Ss046], gi\|73855973\|gb\|... gi\|82776356, gi\|... - gi\|82776356\|ref\|YP_402705.1\| hypothetical protein SDY_1049 [Shigella dysenteriae Sd197], gi\|81240504... gi\|75255235 - gi\|75255235\|ref\|ZP_00727083.1\| COG5475: Uncharacterized small protein [Escherichia coli E22] gi\|75511427 - gi\|75511427\|ref\|ZP_00734102.1\| COG5475: Uncharacterized small protein [Escherichia coli 53638] gi\|81244996, gi\|... - gi\|82543585\|ref\|YP_407532.1\| hypothetical protein SBO_1051 [Shigella boydii Sb227], gi\|81244996\|gb\|A... gi\|89108788, gi\|... - gi\|89108788\|ref\|AP_002568.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|75175545 - gi\|75175545\|ref\|ZP_00695761.1\| COG5475: Uncharacterized small protein [Shigella boydii BS512] gi\|157155225, gi... - gi\|75190974\|ref\|ZP_00704241.1\| COG5475: Uncharacterized small protein [Escherichia coli E24377A], gi... gi\|83569507 - gi\|83569507\|ref\|ZP_00920959.1\| COG5475: Uncharacterized small protein [Shigella dysenteriae 1012] gi\|83585009 - gi\|83585009\|ref\|ZP_00923663.1\| COG5475: Uncharacterized small protein [Escherichia coli 101-1] gi\|75215150 - gi\|75215150\|ref\|ZP_00713598.1\| COG5475: Uncharacterized small protein [Escherichia coli E110019] gi\|75227473 - gi\|75227473\|ref\|ZP_00714240.1\| COG5475: Uncharacterized small protein [Escherichia coli B7A] gi\|157161426, gi... - gi\|75196013\|ref\|ZP_00706083.1\| COG5475: Uncharacterized small protein [Escherichia coli HS], gi\|1571... gi\|75208268 - gi\|75208268\|ref\|ZP_00708625.1\| COG5475: Uncharacterized small protein [Escherichia coli B171] gi\|13362163, gi\|... - gi\|15831949\|ref\|NP_310722.1\| hypothetical protein ECs2695 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|218427516, gi... - gi\|218689952\|ref\|YP_002398164.1\| hypothetical protein ECED1_2224 [Escherichia coli ED1a], gi\|2184275... gi\|217318018, gi... - gi\|217328671\|ref\|ZP_03444752.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218695561, gi... - gi\|218695561\|ref\|YP_002403228.1\| hypothetical protein EC55989_2178 [Escherichia coli 55989], gi\|2183... EG14307 - uncharacterized protein / Function unknown	102.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFMVSEEVT VKEGGPRMIV TGYSSGMVEC RWYDGYGVKR EAFHETDLVP GEGSRSAEEV  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits