YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30041561, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30041561, gi|....

Description	E-value	Query Range	Subject Range
gi\|157077118, gi... - gi\|75190328\|ref\|ZP_00703595.1\| COG4570: Holliday junction resolvase [Escherichia coli E24377A], gi\|1...	198.0	[0..1]	[119..1]
gi\|24113366, gi\|... - gi\|24113366\|ref\|NP_707876.1\| putative crossover junction endodeoxyribonuclease [Shigella flexneri 2a... gi\|30063426, gi\|... - gi\|30063426\|ref\|NP_837597.1\| putative crossover junction endodeoxyribonuclease [Shigella flexneri 2a... gi\|110805954, gi... - gi\|110805954\|ref\|YP_689474.1\| putative endonuclease encoded by cryptic prophage [Shigella flexneri 5...	197.0	[0..2]	[119..4]
gi\|254593063, gi... - gi\|254793663\|ref\|YP_003078500.1\| putative endonuclease encoded within prophage CP-933U [Escherichia ... gi\|25289207, gi\|... - pir\|\|D85820 hypothetical protein Z3115 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15802444, gi\|... - gi\|15802444\|ref\|NP_288470.1\| putative endonuclease encoded within prophage CP-933U [Escherichia coli... gi\|15832005, gi\|... - gi\|15832005\|ref\|NP_310778.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli O15... gi\|217329607, gi... - gi\|217329607\|ref\|ZP_03445686.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia c... gi\|209162230, gi... - gi\|209400830\|ref\|YP_002271126.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia ... gi\|208739543, gi... - gi\|208819420\|ref\|ZP_03259740.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia c... gi\|15832005, gi\|... - gi\|15832005\|ref\|NP_310778.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli O15... gi\|189370999, gi... - gi\|189370999\|gb\|EDU89415.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|168784187, gi... - gi\|188998599\|gb\|EDU67585.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|187767300, gi... - gi\|187767300\|gb\|EDU31144.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|189360826, gi... - gi\|189360826\|gb\|EDU79245.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|208816973, gi... - gi\|208816973\|ref\|ZP_03258093.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia c... gi\|208810247, gi... - gi\|208810247\|ref\|ZP_03252123.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia c... gi\|195939784 - gi\|195939784\|ref\|ZP_03085166.1\| putative crossover junction endodeoxyribonuclease [Escherichia coli ... gi\|168802133, gi... - gi\|189375849\|gb\|EDU94265.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|168763867, gi... - gi\|189366012\|gb\|EDU84428.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|189355407, gi... - gi\|189355407\|gb\|EDU73826.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ... gi\|168751931, gi... - gi\|188014107\|gb\|EDU52229.1\| crossover junction endodeoxyribonuclease RusA homolog [Escherichia coli ...	197.0	[0..1]	[119..1]
gi\|115513263, gi... - gi\|117624139\|ref\|YP_853052.1\| Holliday junction resolvase [Escherichia coli APEC O1], gi\|115513263\|g...	196.0	[0..2]	[119..4]
gi\|193071750, gi... - gi\|75214645\|ref\|ZP_00713165.1\| COG4570: Holliday junction resolvase [Escherichia coli E110019], gi\|1...	192.0	[0..1]	[117..1]
gi\|22001117 - gi\|22001117\|gb\|AAM88320.1\|AF479829_9 unknown [Escherichia coli]	192.0	[0..1]	[117..1]
gi\|75255150, gi\|... - gi\|75255150\|ref\|ZP_00727034.1\| COG4570: Holliday junction resolvase [Escherichia coli E22], gi\|19306...	192.0	[0..1]	[117..1]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHEFILPYP PTVNTYWRRR GSTYFVSKAG ERYRRDVALI VRQQRLKLSL SGRLAIKIIA  60
   61 EPPDKRRRDL DNILKAPLDA LTHAGLLIDD EQFDETNIVR GLPVPGGRLG IKITELECA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	1q8rA
Description:	Structure of E.coli RusA Holliday junction resolvase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits