YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24113058, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24113058, gi|....

Description	E-value	Query Range	Subject Range
EG13955 - putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex / Predicted cytochrome b integral ... PHSC_ECOLI - Protein phsC homolog - Escherichia coli gi\|1742750, gi\|8... - gi\|89108510\|ref\|AP_002290.1\| predicted cytochrome [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|238862216, gi... - gi\|238900885\|ref\|YP_002926681.1\| putative cytochrome [Escherichia coli BW2952], gi\|238862216\|gb\|ACR6... gi\|242377398, gi... - gi\|251785125\|ref\|YP_002999429.1\| hypothetical protein B21_01629 [Escherichia coli BL21], gi\|24237739... gi\|253977827, gi... - gi\|254288520\|ref\|YP_003054268.1\| predicted cytochrome [Escherichia coli BL21(DE3)], gi\|253977827\|gb\|... gi\|253973632, gi... - gi\|254161731\|ref\|YP_003044839.1\| predicted cytochrome [Escherichia coli B str. REL606], gi\|253973632... gi\|83584591, gi\|... - gi\|83584591\|ref\|ZP_00923261.1\| hypothetical protein Ecol1_01004192 [Escherichia coli 101-1], gi\|1944... EG13955 - putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex / Predicted cytochrome b integral ... gi\|170081330, gi... - gi\|170081330\|ref\|YP_001730650.1\| cytochrome [Escherichia coli str. K-12 substr. DH10B], gi\|169889165...	201.0	[0..1]	[261..1]
gi\|169754908, gi... - gi\|170019980\|ref\|YP_001724934.1\| cytochrome B561 [Escherichia coli ATCC 8739], gi\|169754908\|gb\|ACA77... gi\|157161135, gi... - gi\|75195747\|ref\|ZP_00705817.1\| hypothetical protein EcolH_01001546 [Escherichia coli HS], gi\|1571611... gi\|124498456, gi... - gi\|124531601\|ref\|ZP_01701812.1\| cytochrome B561 [Escherichia coli B], gi\|124498456\|gb\|EAY45968.1\| cy...	201.0	[0..1]	[261..1]
gi\|81241294, gi\|... - gi\|82777146\|ref\|YP_403495.1\| hypothetical protein SDY_1898 [Shigella dysenteriae Sd197], gi\|81241294...	201.0	[0..1]	[261..1]
gi\|74312005, gi\|... - gi\|74312005\|ref\|YP_310424.1\| hypothetical protein SSON_1486 [Shigella sonnei Ss046], gi\|73855482\|gb\|...	200.0	[0..1]	[261..1]
gi\|13361844, gi\|... - gi\|15831631\|ref\|NP_310404.1\| hypothetical protein ECs2377 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208818756, gi... - gi\|208818756\|ref\|ZP_03259076.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia... gi\|208817017, gi... - gi\|208817017\|ref\|ZP_03258137.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia... gi\|195940381 - gi\|195940381\|ref\|ZP_03085763.1\| hypothetical protein EscherichcoliO157_28960 [Escherichia coli O157:... gi\|189375373, gi... - gi\|189375373\|gb\|EDU93789.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|217328723, gi... - gi\|217328723\|ref\|ZP_03444804.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia... gi\|209160413, gi... - gi\|209399013\|ref\|YP_002270738.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichi... gi\|13361844, gi\|... - gi\|15831631\|ref\|NP_310404.1\| hypothetical protein ECs2377 [Escherichia coli O157:H7], gi\|13361844\|db... gi\|168765127, gi... - gi\|189365009\|gb\|EDU83425.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|25300105, gi\|... - pir\|\|E85774 hypothetical protein ydhU [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189354430, gi... - gi\|189354430\|gb\|EDU72849.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|254793287, gi... - gi\|254793287\|ref\|YP_003078124.1\| predicted cytochrome [Escherichia coli O157:H7 str. TW14359], gi\|25... gi\|168752356, gi... - gi\|188013784\|gb\|EDU51906.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|15802082, gi\|... - gi\|15802082\|ref\|NP_288104.1\| hypothetical protein Z2697 [Escherichia coli O157:H7 EDL933], gi\|125156... gi\|189370044, gi... - gi\|189370044\|gb\|EDU88460.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|188998795, gi... - gi\|188998795\|gb\|EDU67781.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|187766875, gi... - gi\|187766875\|gb\|EDU30719.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col... gi\|168771666, gi... - gi\|189359626\|gb\|EDU78045.1\| nickel-dependent hydrogenase, b-type cytochrome subunit [Escherichia col...	200.0	[0..1]	[261..1]
gi\|110615194, gi... - gi\|110805646\|ref\|YP_689166.1\| hypothetical protein SFV_1692 [Shigella flexneri 5 str. 8401], gi\|1106...	199.0	[0..1]	[261..1]
gi\|191173442, gi... - gi\|75238772\|ref\|ZP_00722756.1\| hypothetical protein EcolF_01003291 [Escherichia coli F11], gi\|191173... gi\|110343383, gi... - gi\|110641791\|ref\|YP_669521.1\| PhsC-like protein [Escherichia coli 536], gi\|110343383\|gb\|ABG69620.1\| ...	199.0	[0..1]	[261..1]
gi\|227885914, gi... - gi\|227885914\|ref\|ZP_04003719.1\| possible cytochrome [Escherichia coli 83972], gi\|227837093\|gb\|EEJ475... gi\|26247919, gi\|... - gi\|26247919\|ref\|NP_753959.1\| PhsC protein [Escherichia coli CFT073], gi\|26108322\|gb\|AAN80524.1\|AE016...	199.0	[0..1]	[261..1]
gi\|218558539, gi... - gi\|218558539\|ref\|YP_002391452.1\| putative cytochrome b subunit of a reductase [Escherichia coli S88]... gi\|117623851, gi... - gi\|117623851\|ref\|YP_852764.1\| putative cytochrome [Escherichia coli APEC O1], gi\|115512975\|gb\|ABJ010...	197.0	[0..1]	[261..1]
gi\|91072457, gi\|... - gi\|91210883\|ref\|YP_540869.1\| YdhU (PhsC)-like protein [Escherichia coli UTI89], gi\|91072457\|gb\|ABE07... gi\|226900373, gi... - gi\|237705616\|ref\|ZP_04536097.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	197.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSQHAEQF QSQLANYVPQ FTPEFWPVWL IIAGVLLVGM WLVLGLHALL RARGVKKSAT  60
   61 DHGEKVYLYS KAVRLWHWSN ALLFVLLLAS GLINHFAMVG ATAVKSLVAV HEVCGFLLLA 120
  121 CWLGFVLINA VGDNGHHYRI RRQGWLERAA KQTRFYLFGI MQGEEHPFPA TTQSKFNPLQ 180
  181 QVAYVGVMYG LLPLLLLTGL LCLYPQAVGD VFPGVRYWLL QAHFALAFIS LFFIFGHLYL 240
  241 CTTGRTPHET FKSMVDGYHR H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.663361910631013	bayes_pls_golite062009
oxidoreductase activity	0.17038047578982	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: