YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24052004, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24052004, gi|....

Description	E-value	Query Range	Subject Range
gi\|73855505, gi\|... - gi\|74312028\|ref\|YP_310447.1\| hypothetical protein SSON_1512 [Shigella sonnei Ss046], gi\|73855505\|gb\|...	202.0	[0..3]	[288..14]
gi\|13361820 - gi\|13361820\|dbj\|BAB35776.1\| putative membrane protein [Escherichia coli O157:H7 str. Sakai] gi\|209769516, gi... - pir\|\|E85771 probable membrane protein Z2659 [imported] - Escherichia coli (strain O157:H7, substrain... gi\|12515636, gi\|... - gi\|15802058\|ref\|NP_288080.1\| hypothetical protein Z2659 [Escherichia coli O157:H7 EDL933], gi\|125156... gi\|13361820 - gi\|13361820\|dbj\|BAB35776.1\| putative membrane protein [Escherichia coli O157:H7]	201.0	[0..3]	[288..14]
gi\|26108294, gi\|... - gi\|26247891\|ref\|NP_753931.1\| hypothetical protein c2036 [Escherichia coli CFT073], gi\|26108294\|gb\|AA...	201.0	[0..3]	[288..14]
gi\|91210858, gi\|... - gi\|91210858\|ref\|YP_540844.1\| hypothetical protein UTI89_C1835 [Escherichia coli UTI89], gi\|91072432\|...	201.0	[0..3]	[288..14]
gi\|7449875 - gi\|7449875\|pir\|\|F64921 probable membrane protein b1644 - Escherichia coli (strain K-12) gi\|1787932, gi\|4... - gi\|49176130\|ref\|NP_416161.3\| putative multidrug resistance protein [Escherichia coli K12], gb\|AAC747...	201.0	[0..3]	[288..14]
gi\|81241266, gi\|... - gi\|82777118\|ref\|YP_403467.1\| hypothetical protein SDY_1867 [Shigella dysenteriae Sd197], gi\|81241266...	199.0	[0..3]	[288..14]
gi\|81245400, gi\|... - gi\|82543989\|ref\|YP_407936.1\| hypothetical protein SBO_1491 [Shigella boydii Sb227], gi\|81245400\|gb\|A...	198.0	[0..3]	[288..14]
gi\|110805619, gi... - gi\|110805619\|ref\|YP_689139.1\| hypothetical protein SFV_1663 [Shigella flexneri 5 str. 8401], gi\|1106...	197.0	[0..1]	[288..1]
gi\|38704003 - gi\|38704003\|ref\|NP_310380.2\| hypothetical protein ECs2353 [Escherichia coli O157:H7] gi\|208810460, gi... - gi\|208810460\|ref\|ZP_03252336.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|195940207 - gi\|195940207\|ref\|ZP_03085589.1\| hypothetical protein EscherichcoliO157_28076 [Escherichia coli O157:... gi\|38704003 - gi\|38704003\|ref\|NP_310380.2\| hypothetical protein ECs2353 [Escherichia coli O157:H7 str. Sakai] gi\|168789483, gi... - gi\|189370951\|gb\|EDU89367.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|168783916, gi... - gi\|188998808\|gb\|EDU67794.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|168775876, gi... - gi\|187768652\|gb\|EDU32496.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|189359984, gi... - gi\|189359984\|gb\|EDU78403.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|254793261, gi... - gi\|254793261\|ref\|YP_003078098.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli O157:H7 st... gi\|189365000, gi... - gi\|189365000\|gb\|EDU83416.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|168759142, gi... - gi\|189354239\|gb\|EDU72658.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|188013804, gi... - gi\|188013804\|gb\|EDU51926.1\| auxiliary transport protein, membrane fusion protein (MFP) family [Esche... gi\|217328634, gi... - gi\|217328634\|ref\|ZP_03444715.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|209400309, gi... - gi\|209400309\|ref\|YP_002270714.1\| auxiliary transport protein, membrane fusion protein (MFP) family [... gi\|208819137, gi... - gi\|208819137\|ref\|ZP_03259457.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E... gi\|208816585, gi... - gi\|208816585\|ref\|ZP_03257705.1\| auxiliary transport protein, membrane fusion protein (MFP) family [E...	196.0	[0..4]	[288..1]
gi\|157161107, gi... - gi\|157161107\|ref\|YP_001458425.1\| MFP family transporter [Escherichia coli HS], gi\|157066787\|gb\|ABV06... gi\|238863759, gi... - gi\|238900860\|ref\|YP_002926656.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli BW2952], g... gi\|170020004, gi... - gi\|170020004\|ref\|YP_001724958.1\| secretion protein HlyD family protein [Escherichia coli ATCC 8739],... EG13944 - putative membrane fusion protein (MFP) of YdhJK efflux pump / Predicted membrane fusion protein (MFP... EG13944 - putative membrane fusion protein (MFP) of YdhJK efflux pump / Predicted membrane fusion protein (MFP... gi\|124499973, gi... - gi\|124529199\|ref\|ZP_01700274.1\| secretion protein HlyD family protein [Escherichia coli B], gi\|12449... gi\|170081307, gi... - gi\|170081307\|ref\|YP_001730627.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli str. K-12 ... gi\|85675055, gi\|... - gi\|89108486\|ref\|AP_002266.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli str. K-12 subs... gi\|218369773, gi... - gi\|218699787\|ref\|YP_002407416.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli IAI39], gi... gi\|75512922, gi\|... - gi\|75512922\|ref\|ZP_00735403.1\| COG1566: Multidrug resistance efflux pump [Escherichia coli 53638], g... gi\|218705145, gi... - gi\|218705145\|ref\|YP_002412664.1\| undecaprenyl pyrophosphate phosphatase [Escherichia coli UMN026], g... YDHJ_ECOLI - Hypothetical protein ydhJ - Escherichia coli	194.0	[0..4]	[288..1]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTMSIKTIK YFSTIIVAIV AVLAGWWLWN YYMQSPWTRD GKIRAEQVSI TPQVSGRIVE  60
   61 LNIKDNQLVN AGELLLTIDK TPFQIAELNA QAQLAKAQSD LAKANNEANR RRHLSQNFIF 120
  121 AEELDTANLN VKAMQASVNA AQATLKQTQW QLAQTEIRAP VSGWVTNLTT RIGDYADTGK 180
  181 PLFALVDSHS FYVIGYFEET KLRHIREGAP AQITLYSDNK TLQGHVSSIG RAIYDQSVES 240
  241 DSSLIPDVKP NVPWVRLAQL VPVRFALDKV PGDVTLVSGT TCSIAVGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	2f1mA
Description:	No description for 2f1mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits