YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24112984, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24112984, gi|....

Description	E-value	Query Range	Subject Range
gi\|192927428, gi... - gi\|75257016\|ref\|ZP_00728576.1\| hypothetical protein EcolE2_01003066 [Escherichia coli E22], gi\|19306... gi\|194426120, gi... - gi\|75212934\|ref\|ZP_00712932.1\| hypothetical protein EcolB_01000316 [Escherichia coli B171], gi\|19442...	68.0	[0..1]	[99..1]
gi\|110805570, gi... - gi\|110805570\|ref\|YP_689090.1\| acid shock protein precursor [Shigella flexneri 5 str. 8401], gi\|11061... gi\|75190637, gi\|... - gi\|75190637\|ref\|ZP_00703904.1\| hypothetical protein EcolE_01003947 [Escherichia coli E24377A], gi\|15... gi\|192959653, gi... - gi\|75239760\|ref\|ZP_00723721.1\| hypothetical protein EcolE1_01000007 [Escherichia coli E110019], gi\|1... gi\|82776834, gi\|... - gi\|82776834\|ref\|YP_403183.1\| acid shock protein [Shigella dysenteriae Sd197], gi\|81240982\|gb\|ABB6169...	62.0	[0..1]	[99..1]
gi\|190904034, gi... - gi\|75230954\|ref\|ZP_00717403.1\| hypothetical protein EcolB7_01000935 [Escherichia coli B7A], gi\|19116...	61.0	[0..1]	[99..1]
gi\|83587932, gi\|... - gi\|83587932\|ref\|ZP_00926558.1\| hypothetical protein Ecol1_01000965 [Escherichia coli 101-1], gi\|1944...	61.0	[0..1]	[99..1]
gi\|81245447, gi\|... - gi\|82544036\|ref\|YP_407983.1\| acid shock protein [Shigella boydii Sb227], gi\|81245447\|gb\|ABB66155.1\| ... gi\|75178508, gi\|... - gi\|75178508\|ref\|ZP_00698554.1\| hypothetical protein SboyB_01001428 [Shigella boydii BS512], gi\|18773...	56.0	[0..1]	[99..1]
gi\|161486484 - gi\|161486484\|ref\|NP_837282.2\| acid shock protein precursor [Shigella flexneri 2a str. 2457T] gi\|161485907 - gi\|161485907\|ref\|NP_707494.2\| acid shock protein precursor [Shigella flexneri 2a str. 301] ASR_SHIFL - Acid shock protein OS=Shigella flexneri GN=asr PE=3 SV=2	53.0	[0..10]	[99..1]
gi\|124500022, gi... - gi\|124529248\|ref\|ZP_01700323.1\| Acid shock repeat protein [Escherichia coli B], gi\|124500022\|gb\|EAY4... gi\|7465769, gi\|1... - gi\|7465769\|pir\|\|G64915 acid shock protein - Escherichia coli (strain K-12), dbj\|BAA15331.1\| Acid sho... gi\|16129555, gi\|... - gb\|AAC74669.1\| acid shock protein [Escherichia coli K12], gi\|16129555\|ref\|NP_416114.1\| acid shock p... gi\|188494014, gi... - gi\|75512970\|ref\|ZP_00735451.1\| hypothetical protein Ecol5_01002953 [Escherichia coli 53638], gi\|1884...	46.0	[0..1]	[84..1]
gi\|25390812, gi\|... - gi\|25497866\|pir\|\|D85765 acid shock protein [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12515575, gi\|... - gi\|15802011\|ref\|NP_288032.1\| acid shock protein precursor [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|13361770, gi\|... - gi\|15831557\|ref\|NP_310330.1\| acid shock protein precursor [Escherichia coli O157:H7], gi\|13361770\|db... gi\|157066737, gi... - gi\|75195677\|ref\|ZP_00705747.1\| hypothetical protein EcolH_01001475 [Escherichia coli HS], gi\|1571610... gi\|13361770, gi\|... - gi\|15831557\|ref\|NP_310330.1\| acid shock protein precursor [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195938986 - gi\|195938986\|ref\|ZP_03084368.1\| hypothetical protein EscherichcoliO157_21592 [Escherichia coli O157:... gi\|189376920, gi... - gi\|189406037\|ref\|ZP_02825859.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC508], gi\|... gi\|208731132, gi... - gi\|208816789\|ref\|ZP_03257909.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208810759, gi... - gi\|208810759\|ref\|ZP_03252635.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|209396210, gi... - gi\|209396210\|ref\|YP_002270669.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4115], g... gi\|208819269, gi... - gi\|208819269\|ref\|ZP_03259589.1\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|188025032, gi... - gi\|188025032\|ref\|ZP_02775617.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4113], gi... gi\|187776149, gi... - gi\|187776149\|ref\|ZP_02800829.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4196], gi... gi\|189355565, gi... - gi\|189402451\|ref\|ZP_02782499.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4401], gi... gi\|189010654, gi... - gi\|189010654\|ref\|ZP_02808422.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4076], gi... gi\|189370969, gi... - gi\|189405280\|ref\|ZP_02814436.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189403670, gi... - gi\|189403670\|ref\|ZP_02797087.2\| acid shock repeat protein [Escherichia coli O157:H7 str. EC4486], gi...	46.0	[0..1]	[84..1]
gi\|56413550, gi\|... - gi\|56413550\|ref\|YP_150625.1\| acid shock protein precursor [Salmonella enterica subsp. enterica serov...	45.0	[0..2]	[69..5]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQIEGMTM KKVLALVVAA AMGLSSAAFA AETATTPAPT ATTTKAAPAK TTHHKKQHKA  60
   61 APAQKAQAAK KHHKNTKAEQ KAPEQKAQAA KKHAGKHGHQ QPAKPAAQPA A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits