YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30041202, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30041202, gi|....

Description	E-value	Query Range	Subject Range
EG13497 - aminoacyl-tRNA editing domain protein / Aminoacyl-tRNA editing domain protein, function unknown gi\|12515824, gi\|... - gi\|15802201\|ref\|NP_288223.1\| hypothetical protein Z2827 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|168774900, gi... - gi\|187769422\|gb\|EDU33266.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|189360340, gi... - gi\|189360340\|gb\|EDU78759.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|189365717, gi... - gi\|189365717\|gb\|EDU84133.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|168758093, gi... - gi\|189355037\|gb\|EDU73456.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|169889278, gi... - gi\|170081443\|ref\|YP_001730763.1\| hypothetical protein ECDH10B_1925 [Escherichia coli str. K-12 subst... EG13497 - aminoacyl-tRNA editing domain protein / Aminoacyl-tRNA editing domain protein, function unknown gi\|168801052, gi... - gi\|189376747\|gb\|EDU95163.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|189372001, gi... - gi\|189372001\|gb\|EDU90417.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|168782215, gi... - gi\|189000327\|gb\|EDU69313.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|254793409, gi... - gi\|254793409\|ref\|YP_003078246.1\| hypothetical protein ECSP_2359 [Escherichia coli O157:H7 str. TW143... gi\|238860491, gi... - gi\|238901001\|ref\|YP_002926797.1\| hypothetical protein BWG_1600 [Escherichia coli BW2952], gi\|2388604... gi\|188016233, gi... - gi\|188016233\|gb\|EDU54355.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia coli ... gi\|13361963, gi\|... - gi\|15831750\|ref\|NP_310523.1\| hypothetical protein ECs2496 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|218705285, gi... - gi\|218705285\|ref\|YP_002412804.1\| hypothetical protein ECUMN_2076 [Escherichia coli UMN026], gi\|21843... gi\|89108626, gi\|... - gi\|89108626\|ref\|AP_002406.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|81241096, gi\|... - gi\|82776948\|ref\|YP_403297.1\| hypothetical protein SDY_1685 [Shigella dysenteriae Sd197], gi\|81241096... gi\|208820777, gi... - gi\|208820777\|ref\|ZP_03261097.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c... gi\|208816584, gi... - gi\|208816584\|ref\|ZP_03257704.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c... gi\|208725060, gi... - gi\|208810544\|ref\|ZP_03252420.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c... gi\|195937475 - gi\|195937475\|ref\|ZP_03082857.1\| hypothetical protein EscherichcoliO157_13667 [Escherichia coli O157:... gi\|218699645, gi... - gi\|218699645\|ref\|YP_002407274.1\| hypothetical protein ECIAI39_1266 [Escherichia coli IAI39], gi\|2183... gi\|217328730, gi... - gi\|217328730\|ref\|ZP_03444811.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c... YEAK_ECOLI - Hypothetical protein yeaK - Escherichia coli gi\|215265075, gi... - gi\|215487003\|ref\|YP_002329434.1\| hypothetical protein E2348C_1914 [Escherichia coli O127:H6 str. E23... YEAK_ECO57 - Uncharacterized protein YeaK OS=Escherichia coli O157:H7 GN=yeaK PE=4 SV=1 gi\|209157707, gi... - gi\|209396307\|ref\|YP_002270862.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia ...	155.0	[0..1]	[167..1]
gi\|26248046, gi\|... - gi\|26248046\|ref\|NP_754086.1\| hypothetical protein c2192 [Escherichia coli CFT073], gi\|26108449\|gb\|AA... gi\|227837357, gi... - gi\|227885784\|ref\|ZP_04003589.1\| YbaK/prolyl-tRNA synthetase-associated domain protein [Escherichia c...	155.0	[0..1]	[167..1]
gi\|242377507, gi... - gi\|251785234\|ref\|YP_002999538.1\| hypothetical protein B21_01744 [Escherichia coli BL21], gi\|24237750... gi\|226900496, gi... - gi\|237705739\|ref\|ZP_04536220.1\| YbaK/prolyl-tRNA synthetase-associated domain-containing protein [Es... gi\|254161845, gi... - gi\|254161845\|ref\|YP_003044953.1\| hypothetical protein ECB_01756 [Escherichia coli B str. REL606], gi... gi\|254288633, gi... - gi\|254288633\|ref\|YP_003054381.1\| hypothetical protein ECD_01756 [Escherichia coli BL21(DE3)], gi\|253... gi\|188495375, gi... - gi\|75513715\|ref\|ZP_00736091.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|192925769, gi... - gi\|75255308\|ref\|ZP_00727141.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|194428559, gi... - gi\|75210264\|ref\|ZP_00710432.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|117623957, gi... - gi\|117623957\|ref\|YP_852870.1\| hypothetical protein APECO1_855 [Escherichia coli APEC O1], gi\|1155130... gi\|218365423, gi... - gi\|218558654\|ref\|YP_002391567.1\| hypothetical protein ECS88_1841 [Escherichia coli S88], gi\|21836542... gi\|218427291, gi... - gi\|218689727\|ref\|YP_002397939.1\| hypothetical protein ECED1_1993 [Escherichia coli ED1a], gi\|2184272... gi\|169754795, gi... - gi\|170019867\|ref\|YP_001724821.1\| YbaK/prolyl-tRNA synthetase associated region [Escherichia coli ATC... gi\|124498129, gi... - gi\|124532178\|ref\|ZP_01702141.1\| YbaK/prolyl-tRNA synthetase associated region [Escherichia coli B], ... gi\|170684068, gi... - gi\|170684068\|ref\|YP_001743462.1\| YbaK/prolyl-tRNA synthetase-associated domain-containing protein [E... gi\|157161249, gi... - gi\|75195855\|ref\|ZP_00705925.1\| COG2606: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|194439609, gi... - gi\|83584973\|ref\|ZP_00923628.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|91072578, gi\|... - gi\|91211004\|ref\|YP_540990.1\| hypothetical protein UTI89_C1983 [Escherichia coli UTI89], gi\|91072578\|...	155.0	[0..1]	[167..1]
gi\|81245226, gi\|... - gi\|82543815\|ref\|YP_407762.1\| hypothetical protein SBO_1306 [Shigella boydii Sb227], gi\|81245226\|gb\|A... gi\|194433471, gi... - gi\|83569602\|ref\|ZP_00921053.1\| COG2606: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|187429559, gi... - gi\|75177287\|ref\|ZP_00697376.1\| COG2606: Uncharacterized conserved protein [Shigella boydii BS512], g...	155.0	[0..1]	[167..1]
gi\|75236746, gi\|... - gi\|75236746\|ref\|ZP_00720817.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|218352078, gi... - gi\|218695346\|ref\|YP_002403013.1\| hypothetical protein EC55989_1956 [Escherichia coli 55989], gi\|2183... gi\|190900970, gi... - gi\|75227728\|ref\|ZP_00714460.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|209919149, gi... - gi\|209919149\|ref\|YP_002293233.1\| hypothetical protein ECSE_1958 [Escherichia coli SE11], gi\|20991240... gi\|218361123, gi... - gi\|218554355\|ref\|YP_002387268.1\| hypothetical protein ECIAI1_1851 [Escherichia coli IAI1], gi\|218361... gi\|74311901, gi\|... - gi\|74311901\|ref\|YP_310320.1\| hypothetical protein SSON_1374 [Shigella sonnei Ss046], gi\|73855378\|gb\|...	153.0	[0..1]	[167..1]
SYP_BURCH - Proline--tRNA ligase OS=Burkholderia cenocepacia (strain HI2424) GN=proS PE=3 SV=1 SYP_BURCC - Proline--tRNA ligase OS=Burkholderia cenocepacia (strain MC0-3) GN=proS PE=3 SV=1	152.0	[0..9]	[164..236]
gi\|157079911, gi... - gi\|75190818\|ref\|ZP_00704085.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E24377A]...	152.0	[0..1]	[167..1]
SYP_BURCA - Proline--tRNA ligase OS=Burkholderia cenocepacia (strain AU 1054) GN=proS PE=3 SV=1	152.0	[0..9]	[164..236]
gi\|93355883, gi\|... - gi\|94312031\|ref\|YP_585241.1\| prolyl-tRNA synthetase [Ralstonia metallidurans CH34], gi\|93355883\|gb\|A...	152.0	[0..2]	[164..272]
gi\|165875828, gi... - gi\|165975727\|ref\|YP_001651320.1\| hypothetical protein APJL_0279 [Actinobacillus pleuropneumoniae ser... gi\|32035414 - gi\|32035414\|ref\|ZP_00135385.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126207758, gi... - gi\|126207758\|ref\|YP_001052983.1\| hypothetical protein APL_0270 [Actinobacillus pleuropneumoniae L20]...	151.0	[0..6]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEMAKGSVT HQQLIALLSQ EGANFRVVTH EAVGKCEAVS EIRGTALGQG AKALVCKVKG  60
   61 NGVNQHVLAI LAADQQADLS QLASHIGGLR ASLASPAEVD ELTGCVFGAI PPFSFHPKLK 120
  121 LVADPLLFER FDEIAFNAGM LDKSVILKTA DYLRIAQPEL VNFRRTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.045757
Match:	2dxaA
Description:	No description for 2dxaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits