YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051352, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051352, gi|....

Description	E-value	Query Range	Subject Range
gi\|187770551, gi... - gi\|187770551\|gb\|EDU34395.1\| YceI protein [Escherichia coli O157:H7 str. EC4196], gi\|168773901\|ref\|ZP... gi\|168767715, gi... - gi\|189363163\|gb\|EDU81582.1\| YceI protein [Escherichia coli O157:H7 str. EC4486], gi\|168767715\|ref\|ZP... gi\|189370460, gi... - gi\|189370460\|gb\|EDU88876.1\| YceI protein [Escherichia coli O157:H7 str. EC869], gi\|168789991\|ref\|ZP_... gi\|188999113, gi... - gi\|188999113\|gb\|EDU68099.1\| YceI protein [Escherichia coli O157:H7 str. EC4076], gi\|168783586\|ref\|ZP... gi\|169888542, gi... - gi\|170080707\|ref\|YP_001730027.1\| secreted protein [Escherichia coli str. K-12 substr. DH10B], gi\|169... gi\|189375920, gi... - gi\|189375920\|gb\|EDU94336.1\| YceI protein [Escherichia coli O157:H7 str. EC508], gi\|168802001\|ref\|ZP_... gi\|195935445 - gi\|195935445\|ref\|ZP_03080827.1\| hypothetical protein EscherichcoliO157_03142 [Escherichia coli O157:... gi\|170518170, gi... - gi\|170680452\|ref\|YP_001744126.1\| YceI protein [Escherichia coli SMS-3-5], gi\|170518170\|gb\|ACB16348.1... YCEI_ECOLI - Protein yceI precursor - Escherichia coli gi\|188018214, gi... - gi\|188018214\|gb\|EDU56336.1\| YceI protein [Escherichia coli O157:H7 str. EC4113], gi\|168747170\|ref\|ZP... gi\|168764468, gi... - gi\|189365510\|gb\|EDU83926.1\| YceI protein [Escherichia coli O157:H7 str. EC4501], gi\|168764468\|ref\|ZP... gi\|226898169, gi... - gi\|237706959\|ref\|ZP_04537440.1\| yceI [Escherichia sp. 3_2_53FAA], gi\|226898169\|gb\|EEH84428.1\| yceI [... gi\|189354561, gi... - gi\|189354561\|gb\|EDU72980.1\| YceI protein [Escherichia coli O157:H7 str. EC4401], gi\|168758654\|ref\|ZP... gi\|238862858, gi... - gi\|238900310\|ref\|YP_002926106.1\| hypothetical protein BWG_0904 [Escherichia coli BW2952], gi\|2388628... gi\|218700442, gi... - gi\|218700442\|ref\|YP_002408071.1\| hypothetical protein ECIAI39_2108 [Escherichia coli IAI39], gi\|2183... gi\|242376860, gi... - gi\|251784587\|ref\|YP_002998891.1\| hypothetical protein B21_01060 [Escherichia coli BL21], gi\|24237686... gi\|117623243, gi... - gi\|117623243\|ref\|YP_852156.1\| hypothetical protein APECO1_139 [Escherichia coli APEC O1], gi\|1155123... gi\|218351323, gi... - gi\|218694591\|ref\|YP_002402258.1\| hypothetical protein EC55989_1170 [Escherichia coli 55989], gi\|2183... gi\|254287970, gi... - gi\|254287970\|ref\|YP_003053718.1\| hypothetical protein ECD_01052 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973063, gi... - gi\|254161162\|ref\|YP_003044270.1\| hypothetical protein ECB_01052 [Escherichia coli B str. REL606], gi... gi\|254591838, gi... - gi\|254792438\|ref\|YP_003077275.1\| secreted protein [Escherichia coli O157:H7 str. TW14359], gi\|254591... gi\|208732261, gi... - gi\|208815613\|ref\|ZP_03256792.1\| YceI protein [Escherichia coli O157:H7 str. EC4045], gi\|208732261\|gb... gi\|208808045, gi... - gi\|208808045\|ref\|ZP_03250382.1\| YceI protein [Escherichia coli O157:H7 str. EC4206], gi\|208727846\|gb... gi\|209399508, gi... - gi\|209399508\|ref\|YP_002269902.1\| YceI protein [Escherichia coli O157:H7 str. EC4115], gi\|209160908\|g... gi\|208822707, gi... - gi\|208822707\|ref\|ZP_03263026.1\| YceI protein [Escherichia coli O157:H7 str. EC4042], gi\|208738192\|gb... gi\|215264337, gi... - gi\|215486265\|ref\|YP_002328696.1\| hypothetical protein E2348C_1146 [Escherichia coli O127:H6 str. E23... gi\|209918310, gi... - gi\|209918310\|ref\|YP_002292394.1\| hypothetical protein ECSE_1119 [Escherichia coli SE11], gi\|20991156... gi\|218557938, gi... - gi\|218557938\|ref\|YP_002390851.1\| hypothetical protein ECS88_1070 [Escherichia coli S88], gi\|21836470... gi\|217318446, gi... - gi\|217328019\|ref\|ZP_03444101.1\| YceI protein [Escherichia coli O157:H7 str. TW14588], gi\|217318446\|g... gi\|89107902, gi\|... - gi\|89107902\|ref\|AP_001682.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YCEI_ECO57 - Protein YceI OS=Escherichia coli O157:H7 GN=yceI PE=3 SV=1 EG11820 - secreted protein / Secreted protein, function unknown gi\|15801173, gi\|... - gi\|15801173\|ref\|NP_287190.1\| hypothetical protein Z1692 [Escherichia coli O157:H7 EDL933], gi\|125145... EG11820 - secreted protein / Secreted protein, function unknown gi\|75228325, gi\|... - gi\|75228325\|ref\|ZP_00714975.1\| COG2353: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193069508, gi... - gi\|75235939\|ref\|ZP_00720076.1\| COG2353: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|187732459, gi... - gi\|75175816\|ref\|ZP_00696011.1\| COG2353: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|75210330, gi\|... - gi\|75210330\|ref\|ZP_00710492.1\| COG2353: Uncharacterized conserved protein [Escherichia coli B171], g... YCEI_SHISS - Protein YceI OS=Shigella sonnei (strain Ss046) GN=yceI PE=3 SV=1 gi\|91210207, gi\|... - gi\|91210207\|ref\|YP_540193.1\| hypothetical protein UTI89_C1180 [Escherichia coli UTI89], gi\|91071781\|... YCEI_SHIBS - Protein YceI OS=Shigella boydii serotype 4 (strain Sb227) GN=yceI PE=3 SV=1 gi\|13360898, gi\|... - gi\|15830688\|ref\|NP_309461.1\| hypothetical protein ECs1434 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|192927823, gi... - gi\|75257493\|ref\|ZP_00728996.1\| COG2353: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188495752, gi... - gi\|75513501\|ref\|ZP_00735905.1\| COG2353: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|194423000, gi... - gi\|83586409\|ref\|ZP_00925043.1\| COG2353: Uncharacterized conserved protein [Escherichia coli 101-1], ...	247.0	[0..1]	[191..1]
gi\|110342825, gi... - gi\|110641233\|ref\|YP_668963.1\| hypothetical protein ECP_1049 [Escherichia coli 536], gi\|110342825\|gb\|... gi\|190907332, gi... - gi\|75240653\|ref\|ZP_00724570.1\| COG2353: Uncharacterized conserved protein [Escherichia coli F11], gi...	246.0	[0..1]	[191..1]
gi\|75195241, gi\|... - gi\|75195241\|ref\|ZP_00705311.1\| COG2353: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|124498773, gi... - gi\|124531154\|ref\|ZP_01701509.1\| YceI family protein [Escherichia coli B], gi\|124498773\|gb\|EAY46276.1... gi\|170020548, gi... - gi\|170020548\|ref\|YP_001725502.1\| hypothetical protein EcolC_2544 [Escherichia coli ATCC 8739], gi\|16...	246.0	[0..1]	[191..1]
gi\|157159017, gi... - gi\|75190115\|ref\|ZP_00703382.1\| COG2353: Uncharacterized conserved protein [Escherichia coli E24377A]...	246.0	[0..1]	[191..1]
gi\|227836791, gi... - gi\|227886587\|ref\|ZP_04004392.1\| YceI protein [Escherichia coli 83972], gi\|227836791\|gb\|EEJ47257.1\| Y... YCEI_ECOL6 - Protein YceI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yceI PE=3 SV=1 YCEI_ECOL6 - Protein yceI OS=Escherichia coli O6 GN=yceI PE=3 SV=1	246.0	[0..1]	[191..1]
gi\|194419254, gi... - gi\|83570496\|ref\|ZP_00921940.1\| COG2353: Uncharacterized conserved protein [Shigella dysenteriae 1012...	244.0	[0..1]	[191..1]
gi\|213647662 - gi\|213647662\|ref\|ZP_03377715.1\| hypothetical protein SentesTy_10467 [Salmonella enterica subsp. ente... gi\|213850364 - gi\|213850364\|ref\|ZP_03381262.1\| hypothetical protein SentesT_01830 [Salmonella enterica subsp. enter... gi\|214002367 - gi\|214002367\|ref\|ZP_03413102.1\| hypothetical protein Salmonellentericaenterica_19086 [Salmonella ent... YCEI_SALPC - Protein YceI OS=Salmonella paratyphi C (strain RKS4594) GN=yceI PE=3 SV=1 YCEI_SALEP - Protein YceI OS=Salmonella enteritidis PT4 (strain P125109) GN=yceI PE=3 SV=1 gi\|213053061 - gi\|213053061\|ref\|ZP_03345939.1\| hypothetical protein Salmoneentericaenterica_09160 [Salmonella enter... gi\|213427723 - gi\|213427723\|ref\|ZP_03360473.1\| hypothetical protein SentesTyphi_20325 [Salmonella enterica subsp. e... gi\|213579675 - gi\|213579675\|ref\|ZP_03361501.1\| hypothetical protein SentesTyph_00080 [Salmonella enterica subsp. en... YCEI_SALDC - Protein YceI OS=Salmonella dublin (strain CT_02021853) GN=yceI PE=3 SV=1 gi\|200389755, gi... - gi\|200389755\|ref\|ZP_03216366.1\| protein YceI [Salmonella enterica subsp. enterica serovar Virchow st... YCEI_SALTY - Protein yceI OS=Salmonella typhimurium GN=yceI PE=3 SV=1 gi\|204320175, gi... - gi\|204930716\|ref\|ZP_03221589.1\| protein YceI [Salmonella enterica subsp. enterica serovar Javiana st... gi\|238911023 - gi\|238911023\|ref\|ZP_04654860.1\| hypothetical protein SentesTe_07787 [Salmonella enterica subsp. ente... YCEI_SALTI - Protein yceI OS=Salmonella typhi GN=yceI PE=3 SV=1 YCEI_SALG2 - Protein YceI OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yceI PE=3 SV=1 gi\|194468502, gi... - gi\|194468502\|ref\|ZP_03074486.1\| protein YceI [Salmonella enterica subsp. enterica serovar Kentucky s... YCEI_SALSV - Protein YceI OS=Salmonella schwarzengrund (strain CVM19633) GN=yceI PE=3 SV=1 gi\|197263556, gi... - gi\|197263556\|ref\|ZP_03163630.1\| protein YceI [Salmonella enterica subsp. enterica serovar Saintpaul ... YCEI_SALPK - Protein YceI OS=Salmonella paratyphi A (strain AKU_12601) GN=yceI PE=3 SV=1 YCEI_SALCH - Protein yceI OS=Salmonella choleraesuis GN=yceI PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yceI] [protein=hypothetical protein] [protein_id=YP_005236909.1] [location=complement(1203022.... YCEI_SALPA - Protein yceI OS=Salmonella paratyphi A GN=yceI PE=3 SV=1 YCEI_SALCH - Protein YceI OS=Salmonella choleraesuis (strain SC-B67) GN=yceI PE=3 SV=1 YCEI_SALTY - Protein yceI OS=Salmonella typhimurium GN=yceI PE=3 SV=1 YCEI_SALCH - Protein yceI OS=Salmonella choleraesuis GN=yceI PE=3 SV=1 YCEI_SALAR - Protein YceI OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=yceI PE=3 SV=1 YCEI_SALPB - Protein yceI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yceI PE=3 SV=1 YCEI_SALPA - Protein YceI OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yceI PE=3 SV=1 gi\|168264055, gi... - gi\|205347377\|gb\|EDZ34008.1\| protein YceI [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168467103, gi... - gi\|195630414\|gb\|EDX49040.1\| protein YceI [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205340999, gi... - gi\|205340999\|gb\|EDZ27763.1\| protein YceI [Salmonella enterica subsp. enterica serovar Weltevreden st... YCEI_SALHS - Protein YceI OS=Salmonella heidelberg (strain SL476) GN=yceI PE=3 SV=1 YCEI_SALTY - Protein YceI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yceI PE=3 SV=1 gi\|167994017, gi... - gi\|205328019\|gb\|EDZ14783.1\| protein YceI [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|29142195, gi\|... - gi\|29142195\|ref\|NP_805537.1\| hypothetical protein t1763 [Salmonella enterica subsp. enterica serovar... gi\|205331916, gi... - gi\|205331916\|gb\|EDZ18680.1\| protein YceI [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197289808, gi... - gi\|197289808\|gb\|EDY29169.1\| protein YceI [Salmonella enterica subsp. enterica serovar Schwarzengrund... YCEI_SALTI - Protein YceI OS=Salmonella typhi GN=yceI PE=3 SV=1 gi\|168244751, gi... - gi\|205336440\|gb\|EDZ23204.1\| protein YceI [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|16760034 - gi\|16760034\|ref\|NP_455651.1\| hypothetical protein STY1194 [Salmonella enterica subsp. enterica serov... gi\|205322451, gi... - gi\|205322451\|gb\|EDZ10290.1\| protein YceI [Salmonella enterica subsp. enterica serovar Saintpaul str.... YCEI_SALPB - Protein YceI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yceI PE=3 SV=1	243.0	[0..1]	[191..1]
gi\|238728612, gi... - gi\|77979112\|ref\|ZP_00834533.1\| COG2353: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	239.0	[0..2]	[191..3]
Y2234_YERPS - UPF0312 protein YPTB2234 OS=Yersinia pseudotuberculosis GN=YPTB2234 PE=3 SV=1 gi\|229837834, gi... - gi\|229837834\|ref\|ZP_04457993.1\| secreted protein [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... Y2315_YERPE - UPF0312 protein YPO2315/YP_2102 OS=Yersinia pestis GN=YPO2315 PE=3 SV=1 gi\|229702088, gi... - gi\|229894993\|ref\|ZP_04510171.1\| secreted protein [Yersinia pestis Pestoides A], gi\|229702088\|gb\|EEO9... gi\|229898395, gi... - gi\|229898395\|ref\|ZP_04513542.1\| secreted protein [Yersinia pestis biovar Orientalis str. India 195],... gi\|166010680, gi... - gi\|166010680\|ref\|ZP_02231578.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165927222, gi... - gi\|165927222\|ref\|ZP_02223054.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|89104488, gi\|... - gi\|89104488\|ref\|ZP_01177030.1\| COG2353: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|166958955, gi... - gi\|167422143\|ref\|ZP_02313896.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166210755, gi... - gi\|166210755\|ref\|ZP_02236790.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45436758, gi\|... - gi\|45441895\|ref\|NP_993434.1\| hypothetical protein YP_2102 [Yersinia pestis biovar Microtus str. 9100... Y1931_YERPY - UPF0312 protein YPK_1931 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1931 PE=3... Y2224_YERPG - UPF0312 protein YpAngola_A2224 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A2224 PE=3... gi\|167467115 - gi\|167467115\|ref\|ZP_02331819.1\| hypothetical protein YpesF_04275 [Yersinia pestis FV-1] gi\|16122539, gi\|... - gi\|218929407\|ref\|YP_002347282.1\| hypothetical protein YPO2315 [Yersinia pestis CO92], gi\|16122539\|re... Y1821_YERP3 - UPF0312 protein YpsIP31758_1821 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|149292186, gi... - gi\|149365773\|ref\|ZP_01887808.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149292186\|... Y2234_YERPS - UPF0312 protein YPTB2234 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2234 PE=3... Y829_YERPP - UPF0312 protein YPDSF_0829 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_0829 PE=3 SV=1 Y2311_YERPB - UPF0312 protein YPTS_2311 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2311 PE=...	238.0	[0..1]	[191..2]
gi\|238721902, gi... - gi\|77975567\|ref\|ZP_00831102.1\| COG2353: Uncharacterized conserved protein [Yersinia frederiksenii AT...	238.0	[0..2]	[191..3]

Back

Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSLLGLTF ASLMFSAGSA VAADYKIDKE GQHAFVNFRI QHLGYSWLYG TFKDFDGTFT  60
   61 FDEKNPAADK VNVTINTTSV DTNHAERDKH LRSADFLNTT KYPQATFTST SVKKDGDELD 120
  121 ITGDLTLNGV TKPVTLEAKL IGQGDDPWGG KRAGFEAEGK IKLKDFNIKT DLGPASQEVD 180
  181 LIISVEGVQQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	1y0gA
Description:	CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits