YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30040809, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30040809, gi|....

Description	E-value	Query Range	Subject Range
gi\|110342807, gi... - gi\|110641215\|ref\|YP_668945.1\| curli assembly protein CsgE [Escherichia coli 536], gi\|110342807\|gb\|AB... EG13411 - curlin secretion specificity factor / Curlin secretion specificity factor; blocks CsgA amyloid forma... gi\|192927835, gi... - gi\|75257478\|ref\|ZP_00728981.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|188490603, gi... - gi\|75513485\|ref\|ZP_00735889.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|193069494, gi... - gi\|75235961\|ref\|ZP_00720098.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|191172386, gi... - gi\|75240638\|ref\|ZP_00724555.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|188018124, gi... - gi\|188018124\|gb\|EDU56246.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|73855068, gi\|... - gi\|74311591\|ref\|YP_310010.1\| curli assembly protein CsgE [Shigella sonnei Ss046], gi\|73855068\|gb\|AAZ... gi\|168754515, gi... - gi\|189358340\|gb\|EDU76759.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|168760624, gi... - gi\|189368803\|gb\|EDU87219.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|157078391, gi... - gi\|75190100\|ref\|ZP_00703367.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|75210315, gi\|... - gi\|75210315\|ref\|ZP_00710477.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|253324980, gi... - gi\|254287954\|ref\|YP_003053702.1\| predicted transport protein [Escherichia coli BL21(DE3)], gi\|253977... gi\|251784572, gi... - gi\|251784572\|ref\|YP_002998876.1\| hypothetical protein B21_01043 [Escherichia coli BL21], gi\|24237684... gi\|238862091, gi... - gi\|238900294\|ref\|YP_002926090.1\| putative transport protein [Escherichia coli BW2952], gi\|238862091\|... gi\|237706980, gi... - gi\|237706980\|ref\|ZP_04537461.1\| curli production assembly/transport subunit CsgE [Escherichia sp. 3_... gi\|227886607, gi... - gi\|227886607\|ref\|ZP_04004412.1\| curli assembly protein CsgE [Escherichia coli 83972], gi\|227836811\|g... CSGE_ECOL6 - Curli production assembly/transport component CsgE OS=Escherichia coli O6 GN=csgE PE=3 SV=1 CSGE_ECOLI - Curli production assembly/transport component csgE precursor - Escherichia coli gi\|4062603, gi\|8... - gi\|89107884\|ref\|AP_001664.1\| predicted transport protein [Escherichia coli str. K-12 substr. W3110],... CSGE_ECOL6 - Curli production assembly/transport component CsgE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|91210187, gi\|... - gi\|91210187\|ref\|YP_540173.1\| curli assembly protein CsgE [Escherichia coli UTI89], gi\|91071761\|gb\|AB... gi\|13360876, gi\|... - gi\|15830670\|ref\|NP_309443.1\| curli assembly protein CsgE [Escherichia coli O157:H7 str. Sakai], gi\|1... EG13411 - curlin secretion specificity factor / Curlin secretion specificity factor; blocks CsgA amyloid forma... CSGE_ECO57 - Curli production assembly/transport component CsgE OS=Escherichia coli O157:H7 GN=csgE PE=3 SV=1 gi\|15801156, gi\|... - gi\|15801156\|ref\|NP_287173.1\| curli assembly protein CsgE [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|157160561, gi... - gi\|157160561\|ref\|YP_001457879.1\| curli assembly protein CsgE [Escherichia coli HS], gi\|157066241\|gb\|... gi\|115512352, gi... - gi\|117623228\|ref\|YP_852141.1\| curli assembly protein CsgE [Escherichia coli APEC O1], gi\|115512352\|g... gi\|124531169, gi... - gi\|124531169\|ref\|ZP_01701524.1\| curli production assembly/transport component, 2nd curli operon [Esc... gi\|254792422, gi... - gi\|254792422\|ref\|YP_003077259.1\| predicted transport protein [Escherichia coli O157:H7 str. TW14359]... gi\|253973047, gi... - gi\|254161146\|ref\|YP_003044254.1\| predicted transport protein [Escherichia coli B str. REL606], gi\|25... gi\|194438017, gi... - gi\|194438017\|ref\|ZP_03070110.1\| curli production assembly/transport subunit CsgE [Escherichia coli 1... gi\|195935426 - gi\|195935426\|ref\|ZP_03080808.1\| curli assembly protein CsgE [Escherichia coli O157:H7 str. EC4024] gi\|208809183, gi... - gi\|208809183\|ref\|ZP_03251520.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|208816411, gi... - gi\|208816411\|ref\|ZP_03257590.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|208737721, gi... - gi\|208822236\|ref\|ZP_03262555.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|209161230, gi... - gi\|209399830\|ref\|YP_002269886.1\| curli production assembly/transport subunit CsgE [Escherichia coli ... gi\|209911551, gi... - gi\|209918292\|ref\|YP_002292376.1\| curli assembly protein CsgE [Escherichia coli SE11], gi\|209911551\|d... gi\|215264320, gi... - gi\|215486248\|ref\|YP_002328679.1\| curli assembly protein CsgE [Escherichia coli O127:H6 str. E2348/69... gi\|189363096, gi... - gi\|189363096\|gb\|EDU81515.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|187770401, gi... - gi\|187770401\|gb\|EDU34245.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|188999068, gi... - gi\|188999068\|gb\|EDU68054.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|168799313, gi... - gi\|189378313\|gb\|EDU96729.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|169755492, gi... - gi\|170020564\|ref\|YP_001725518.1\| curli assembly protein CsgE [Escherichia coli ATCC 8739], gi\|169755... gi\|170080691, gi... - gi\|170080691\|ref\|YP_001730011.1\| transport protein [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|170681334, gi... - gi\|170681334\|ref\|YP_001744146.1\| curli production assembly/transport subunit CsgE [Escherichia coli ... gi\|190903024, gi... - gi\|191166912\|ref\|ZP_03028736.1\| curli production assembly/transport subunit CsgE [Escherichia coli B... gi\|217318591, gi... - gi\|217328164\|ref\|ZP_03444246.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|218360385, gi... - gi\|218553617\|ref\|YP_002386530.1\| curli assembly protein CsgE [Escherichia coli IAI1], gi\|218360385\|e... gi\|218364689, gi... - gi\|218557920\|ref\|YP_002390833.1\| curli assembly protein CsgE [Escherichia coli S88], gi\|218364689\|em... gi\|218688992, gi... - gi\|218688992\|ref\|YP_002397204.1\| curli assembly protein CsgE [Escherichia coli ED1a], gi\|218426556\|e... gi\|218694574, gi... - gi\|218694574\|ref\|YP_002402241.1\| curli assembly protein CsgE [Escherichia coli 55989], gi\|218351306\|... gi\|218370444, gi... - gi\|218700458\|ref\|YP_002408087.1\| curli assembly protein CsgE [Escherichia coli IAI39], gi\|218370444\|... gi\|218431544, gi... - gi\|218704447\|ref\|YP_002411966.1\| curli assembly protein CsgE [Escherichia coli UMN026], gi\|218431544...	213.0	[0..1]	[129..1]
gi\|83570514, gi\|... - gi\|83570514\|ref\|ZP_00921958.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Shigella dysent...	212.0	[0..1]	[129..1]
gi\|81240453, gi\|... - gi\|82776305\|ref\|YP_402654.1\| curli assembly protein CsgE [Shigella dysenteriae Sd197], gi\|81240453\|g...	211.0	[0..1]	[129..1]
CSGE_SALTY - Curli production assembly/transport component CsgE OS=Salmonella typhimurium GN=csgE PE=4 SV=1 CSGE_SALTI - Curli production assembly/transport component CsgE OS=Salmonella typhi GN=csgE PE=3 SV=1 CSGE_SALTY - Curli production assembly/transport component CsgE OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... CSGE_SALTI - Curli production assembly/transport component csgE OS=Salmonella typhi GN=csgE PE=3 SV=1 gi\|29142211, gi\|... - gi\|29142211\|ref\|NP_805553.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica serova... gi\|16760018 - gi\|16760018\|ref\|NP_455635.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica serova... gi\|161614645, gi... - gi\|161614645\|ref\|YP_001588610.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica se... gi\|205328039, gi... - gi\|205328039\|gb\|EDZ14803.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|168234057, gi... - gi\|205331937\|gb\|EDZ18701.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|213023704 - gi\|213023704\|ref\|ZP_03338151.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213162402 - gi\|213162402\|ref\|ZP_03348112.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213420223 - gi\|213420223\|ref\|ZP_03353289.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213427738 - gi\|213427738\|ref\|ZP_03360488.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|194735309, gi... - gi\|194735309\|ref\|YP_002114138.1\| curli production assembly/transport component CsgE [Salmonella ente... gi\|197261761, gi... - gi\|197261761\|ref\|ZP_03161835.1\| curli production assembly/transport component CsgE [Salmonella enter... gi\|197094271, gi... - gi\|197362794\|ref\|YP_002142431.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica se... gi\|206709154, gi... - gi\|207857351\|ref\|YP_002244002.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica se... gi\|205341008, gi... - gi\|205341008\|gb\|EDZ27772.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|194404628, gi... - gi\|194445965\|ref\|YP_002040394.1\| curli production assembly/transport component CsgE [Salmonella ente... gi\|194408093, gi... - gi\|194449789\|ref\|YP_002045139.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica se... gi\|194454916, gi... - gi\|194468552\|ref\|ZP_03074536.1\| curli production assembly/transport component CsgE [Salmonella enter... gi\|168237216, gi... - gi\|197289790\|gb\|EDY29151.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|205336434, gi... - gi\|205336434\|gb\|EDZ23198.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|205347336, gi... - gi\|205347336\|gb\|EDZ33967.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|168467082, gi... - gi\|195630437\|gb\|EDX49063.1\| curli production assembly/transport component CsgE [Salmonella enterica ... gi\|62179659, gi\|... - gi\|62179659\|ref\|YP_216076.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica serova... gi\|56413871, gi\|... - gi\|56413871\|ref\|YP_150946.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica serova... CSGE_SALTY - Curli production assembly/transport component csgE OS=Salmonella typhimurium GN=csgE PE=4 SV=1 gi\|214002381 - gi\|214002381\|ref\|ZP_03413116.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|224468881, gi... - gi\|224584354\|ref\|YP_002638152.1\| assembly/transport component in curli production [Salmonella enteri... gi\|213581809 - gi\|213581809\|ref\|ZP_03363635.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213618651 - gi\|213618651\|ref\|ZP_03372477.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213646855 - gi\|213646855\|ref\|ZP_03376908.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser... gi\|213864884 - gi\|213864884\|ref\|ZP_03387003.1\| curli assembly protein CsgE [Salmonella enterica subsp. enterica ser...	204.0	[0..1]	[129..1]
gi\|82717354, gi\|... - gi\|82735721\|ref\|ZP_00898583.1\| curli fiber protein CsgE, putative [Pseudomonas putida F1], gi\|827173...	166.0	[0..15]	[129..17]
gi\|126320244, gi... - gi\|21552994\|gb\|AAM62418.1\|AF515666_4 CsmE [Pseudomonas putida GB-1], gi\|167033467\|ref\|YP_001668698.1...	164.0	[0..20]	[129..19]
tr\|E4RB53\|E4RB53... - Curli assembly protein CsgE OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_2319 PE=4 SV=1 gi\|24985127, gi\|... - gi\|26990186\|ref\|NP_745611.1\| curli assembly protein CsgE [Pseudomonas putida KT2440], gi\|24985127\|gb...	164.0	[0..15]	[129..17]
gi\|104781914, gi... - gi\|95110901\|emb\|CAK15617.1\| putative curli fiber operon CsgE [Pseudomonas entomophila L48], gi\|10478... gi\|95110901 - gi\|95110901\|emb\|CAK15617.1\| putative curli fiber operon CsgE [Pseudomonas entomophila L48]	154.0	[0..9]	[129..8]
gi\|78063433, gi\|... - gi\|78063433\|ref\|YP_373341.1\| hypothetical protein Bcep18194_B2586 [Burkholderia sp. 383], gi\|7797131...	146.0	[0..24]	[128..93]
gi\|24375185, gi\|... - gi\|24375185\|ref\|NP_719228.1\| curli production assembly/transport component CsgE, putative [Shewanell... SO3687 - curli production assembly/transport component CsgE putative	134.0	[0..5]	[105..8]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRYLRWIVA AEFLFAAGNL HAVEVEVPGL LTDHTVSSIG HDFYRAFSDK WESDYTGNLT  60
   61 INERPSARWG SWITITVNQD VIFQTFLFPL KRDSEKTVVF ALIQTEEALN RRQINQALLS 120
  121 TDDLAHDEF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.735	d.93.1	SH2 domain
View	Download	0.644	d.204.1	Ribosome binding protein Y (YfiA homologue)
View	Download	0.633	d.93.1	SH2 domain
View	Download	0.573	d.93.1	SH2 domain
View	Download	0.572	d.87.1	FAD/NAD-linked reductases, dimerisation (C-terminal) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits