YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30062523, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30062523, gi|....

Description	E-value	Query Range	Subject Range
YMCC_ECOLI - Hypothetical lipoprotein ymcC precursor - Escherichia coli gi\|187428845, gi... - gi\|187731853\|ref\|YP_001880816.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Shigella bo... gi\|169888478, gi... - gi\|170080643\|ref\|YP_001729963.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. DH10... gi\|170020614, gi... - gi\|170020614\|ref\|YP_001725568.1\| putative regulator [Escherichia coli ATCC 8739], gi\|169755542\|gb\|AC... gi\|157066185, gi... - gi\|157160505\|ref\|YP_001457823.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia... EG13731 - O-antigen capsule production lipoprotein / Lipoprotein required to make O-antigen capsule; predicted... gi\|82544690, gi\|... - gi\|82544690\|ref\|YP_408637.1\| putative regulator [Shigella boydii Sb227], gi\|81246101\|gb\|ABB66809.1\| ... gi\|157156862, gi... - gi\|157156862\|ref\|YP_001462218.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia... gi\|74311543, gi\|... - gi\|74311543\|ref\|YP_309962.1\| putative regulator [Shigella sonnei Ss046], gi\|73855020\|gb\|AAZ87727.1\| ... gi\|238862708, gi... - gi\|238900244\|ref\|YP_002926040.1\| putative outer membrane lipoprotein [Escherichia coli BW2952], gi\|2... gi\|194432417, gi... - gi\|194432417\|ref\|ZP_03064704.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Shigella dys... gi\|89107835, gi\|... - gi\|89107835\|ref\|AP_001615.1\| predicted outer membrane lipoprotein [Escherichia coli str. K-12 substr... gi\|192955902, gi... - gi\|193070791\|ref\|ZP_03051725.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|190903424, gi... - gi\|191166619\|ref\|ZP_03028448.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|188488615, gi... - gi\|188493416\|ref\|ZP_03000686.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... EG13731 - O-antigen capsule production lipoprotein / Lipoprotein required to make O-antigen capsule; predicted... gi\|124500069, gi... - gi\|124529114\|ref\|ZP_01700224.1\| putative regulator [Escherichia coli B], gi\|124500069\|gb\|EAY47547.1\|... gi\|209918239, gi... - gi\|209918239\|ref\|YP_002292323.1\| putative regulator [Escherichia coli SE11], gi\|209911498\|dbj\|BAG765...	334.0	[0..1]	[214..1]
gi\|168747399, gi... - gi\|188018121\|gb\|EDU56243.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|13360602, gi\|... - gi\|15830396\|ref\|NP_309169.1\| putative regulator [Escherichia coli O157:H7], gi\|13360602\|dbj\|BAB34565... gi\|209774166, gi... - pir\|\|B85634 probable regulator ymcC [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|217321767, gi... - gi\|217325546\|ref\|ZP_03441630.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|209161344, gi... - gi\|209399944\|ref\|YP_002269712.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia... gi\|15800907, gi\|... - gi\|15800907\|ref\|NP_286923.1\| putative regulator [Escherichia coli O157:H7 EDL933], gi\|12514251\|gb\|AA... gi\|208737795, gi... - gi\|208822310\|ref\|ZP_03262629.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|13360602, gi\|... - gi\|15830396\|ref\|NP_309169.1\| putative regulator [Escherichia coli O157:H7 str. Sakai], gi\|13360602\|d... gi\|189001216, gi... - gi\|189001216\|gb\|EDU70202.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168767484, gi... - gi\|189363180\|gb\|EDU81599.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168763223, gi... - gi\|189366558\|gb\|EDU84974.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|168754307, gi... - gi\|189358256\|gb\|EDU76675.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|208815076, gi... - gi\|208815076\|ref\|ZP_03256255.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|208808426, gi... - gi\|208808426\|ref\|ZP_03250763.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia ... gi\|195935244 - gi\|195935244\|ref\|ZP_03080626.1\| putative regulator [Escherichia coli O157:H7 str. EC4024] gi\|168800616, gi... - gi\|189377085\|gb\|EDU95501.1\| group 4 capsule (G4C) polysaccharide, lipoprotein YmcC [Escherichia coli... gi\|254792243, gi... - gi\|254792243\|ref\|YP_003077080.1\| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str....	334.0	[0..1]	[214..1]
gi\|82776276, gi\|... - gi\|82776276\|ref\|YP_402625.1\| putative regulator [Shigella dysenteriae Sd197], gi\|81240424\|gb\|ABB6113...	329.0	[0..1]	[214..1]
gi\|75188754 - gi\|75188754\|ref\|ZP_00702021.1\| hypothetical protein EcolE_01002028 [Escherichia coli E24377A] gi\|218697732, gi... - gi\|218697732\|ref\|YP_002405399.1\| putative lipoprotein [Escherichia coli 55989], gi\|218354464\|emb\|CAV... gi\|193063018, gi... - gi\|75258948\|ref\|ZP_00730316.1\| hypothetical protein EcolE2_01001210 [Escherichia coli E22], gi\|19306... gi\|193067845, gi... - gi\|75238566\|ref\|ZP_00722555.1\| hypothetical protein EcolE1_01000879 [Escherichia coli E110019], gi\|1... gi\|75211911, gi\|... - gi\|75211911\|ref\|ZP_00711966.1\| hypothetical protein EcolB_01000909 [Escherichia coli B171], gi\|19442...	302.0	[0..1]	[213..1]
YJBF_ECOLI - Hypothetical lipoprotein yjbF precursor - Escherichia coli gi\|85676779, gi\|... - gi\|89110748\|ref\|AP_004528.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|75514788 - gi\|75514788\|ref\|ZP_00737017.1\| hypothetical protein Ecol5_01001199 [Escherichia coli 53638] gi\|238862628, gi... - gi\|238903080\|ref\|YP_002928876.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862628\|gb\|ACR... EG11924 - extracellular polysaccharide production lipoprotein / Lipoprotein required to make novel extracellul... EG11924 - extracellular polysaccharide production lipoprotein / Lipoprotein required to make novel extracellul... gi\|170083484, gi... - gi\|170083484\|ref\|YP_001732804.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16989131...	301.0	[0..1]	[213..1]
gi\|110807956, gi... - gi\|110807956\|ref\|YP_691476.1\| hypothetical protein SFV_4187 [Shigella flexneri 5 str. 8401], gi\|1106...	301.0	[0..1]	[213..1]
gi\|110644366, gi... - gi\|110644366\|ref\|YP_672096.1\| lipoprotein YjbF precursor [Escherichia coli 536], gi\|110345958\|gb\|ABG... gi\|218692312, gi... - gi\|218692312\|ref\|YP_002400524.1\| putative lipoprotein [Escherichia coli ED1a], gi\|218429876\|emb\|CAR1...	301.0	[0..1]	[213..1]
gi\|253980020, gi... - gi\|254290713\|ref\|YP_003056461.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253980020\|gb... gi\|124498419, gi... - gi\|124531706\|ref\|ZP_01701874.1\| conserved hypothetical lipoprotein YjbF precursor [Escherichia coli ... gi\|251787284, gi... - gi\|251787284\|ref\|YP_003001588.1\| hypothetical protein B21_03859 [Escherichia coli BL21], gi\|24237955... gi\|253975864, gi... - gi\|254163963\|ref\|YP_003047071.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397586... gi\|83587121, gi\|... - gi\|83587121\|ref\|ZP_00925750.1\| hypothetical protein Ecol1_01001508 [Escherichia coli 101-1], gi\|1944... gi\|170021975, gi... - gi\|170021975\|ref\|YP_001726929.1\| hypothetical protein EcolC_4003 [Escherichia coli ATCC 8739], gi\|16...	300.0	[0..1]	[213..1]
gi\|75197888 - gi\|75197888\|ref\|ZP_00707958.1\| hypothetical protein EcolH_01003728 [Escherichia coli HS]	300.0	[0..1]	[213..1]
gi\|75230260 - gi\|75230260\|ref\|ZP_00716757.1\| hypothetical protein EcolB7_01001520 [Escherichia coli B7A] gi\|75195175 - gi\|75195175\|ref\|ZP_00705245.1\| hypothetical protein EcolH_01000964 [Escherichia coli HS] gi\|75190053 - gi\|75190053\|ref\|ZP_00703320.1\| hypothetical protein EcolE_01003347 [Escherichia coli E24377A] gi\|75175454 - gi\|75175454\|ref\|ZP_00695674.1\| hypothetical protein SboyB_01004463 [Shigella boydii BS512] gi\|83586467 - gi\|83586467\|ref\|ZP_00925101.1\| hypothetical protein Ecol1_01002361 [Escherichia coli 101-1] gi\|83570607 - gi\|83570607\|ref\|ZP_00922051.1\| hypothetical protein Sdys1_01001232 [Shigella dysenteriae 1012] gi\|75513438 - gi\|75513438\|ref\|ZP_00735842.1\| hypothetical protein Ecol5_01002428 [Escherichia coli 53638] gi\|75234378 - gi\|75234378\|ref\|ZP_00718748.1\| hypothetical protein EcolE1_01003751 [Escherichia coli E110019]	299.0	[0..23]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLILSIFA LFLAGCTHSQ QSMVDTFRAS LFDNQDITVA AQQIQALPYS TMYLRLNEGQ  60
   61 RIFVVLGYIE QEQSKWLSQD NAMLVTHNGR LLKTVKLNNN LLEVTNPGRA PLRNALAIKD 120
  121 GSRWTRDILW SEDNHFRSAT LSSTFSFAGL ETLNIAGHNV LCNVWQEEVT STLPEKQWQN 180
  181 TFWVDSATGQ VRQSRQMLGA GVIPVEMTFL KPAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.154902
Match:	2in5A
Description:	No description for 2in5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits