YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30040750, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30040750, gi|....

Description	E-value	Query Range	Subject Range
gi\|26107387, gi\|... - gi\|26246987\|ref\|NP_753027.1\| hypothetical protein c1102 [Escherichia coli CFT073], gi\|26107387\|gb\|AA...	168.0	[0..1]	[155..10]
gi\|237707050, gi... - gi\|237707050\|ref\|ZP_04537531.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|74311523, gi\|... - gi\|74311523\|ref\|YP_309942.1\| hypothetical protein SSON_0970 [Shigella sonnei Ss046], gi\|73855000\|gb\|... gi\|81246122, gi\|... - gi\|82544711\|ref\|YP_408658.1\| hypothetical protein SBO_2266 [Shigella boydii Sb227], gi\|81246122\|gb\|A... gi\|91210061, gi\|... - gi\|91210061\|ref\|YP_540047.1\| hypothetical protein UTI89_C1031 [Escherichia coli UTI89], gi\|91071635\|... gi\|110614529, gi... - gi\|110804981\|ref\|YP_688501.1\| hypothetical protein SFV_0975 [Shigella flexneri 5 str. 8401], gi\|1106...	168.0	[0..1]	[155..10]
gi\|82776256, gi\|... - gi\|82776256\|ref\|YP_402605.1\| hypothetical protein SDY_0940 [Shigella dysenteriae Sd197], gi\|81240404...	167.0	[0..1]	[155..10]
gi\|7429389 - gi\|7429389\|pir\|\|D64837 hypothetical protein b0965 - Escherichia coli (strain K-12) gi\|1787199, gi\|4... - gi\|49176064\|ref\|NP_415485.3\| protein (unknown function) [Escherichia coli K12], gb\|AAC74051.1\| prote...	167.0	[0..1]	[155..10]
gi\|16502253, gi\|... - gi\|25303469\|pir\|\|AI0627 conserved hypothetical protein STY1101 [imported] - Salmonella enterica subs... gi\|62127233, gi\|... - gi\|62179600\|ref\|YP_216017.1\| hypothetical protein SC1030 [Salmonella enterica subsp. enterica serova... gi\|224584415, gi... - gi\|224584415\|ref\|YP_002638213.1\| hypothetical protein SPC_2671 [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_1223] [protein=putative cytoplasmic protein] [protein_id=YP_005236812.1] [location=11282... gi\|161614727, gi... - gi\|161614727\|ref\|YP_001588692.1\| hypothetical protein SPAB_02479 [Salmonella enterica subsp. enteric... gi\|16759959 - gi\|16759959\|ref\|NP_455576.1\| hypothetical protein STY1101 [Salmonella enterica subsp. enterica serov... gi\|16764437, gi\|... - gi\|16764437\|ref\|NP_460052.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419594\|... gi\|29137899, gi\|... - gi\|29142269\|ref\|NP_805611.1\| hypothetical protein t1842 [Salmonella enterica subsp. enterica serovar...	150.0	[0..18]	[155..1]
gi\|56413925, gi\|... - gi\|56413925\|ref\|YP_151000.1\| hypothetical protein SPA1772 [Salmonella enterica subsp. enterica serov... gi\|213646089 - gi\|213646089\|ref\|ZP_03376142.1\| hypothetical protein SentesTy_01279 [Salmonella enterica subsp. ente... gi\|213425895 - gi\|213425895\|ref\|ZP_03358645.1\| hypothetical protein SentesTyphi_09724 [Salmonella enterica subsp. e... gi\|213420770 - gi\|213420770\|ref\|ZP_03353836.1\| hypothetical protein Salmonentericaenterica_24707 [Salmonella enteri... gi\|238911099 - gi\|238911099\|ref\|ZP_04654936.1\| hypothetical protein SentesTe_08177 [Salmonella enterica subsp. ente... gi\|197094325, gi... - gi\|197362848\|ref\|YP_002142485.1\| hypothetical protein SSPA1645 [Salmonella enterica subsp. enterica ...	149.0	[0..19]	[155..1]
gi\|241903107, gi... - gi\|241903107\|ref\|ZP_04787835.1\| ketol-acid reductoisomerase [Thermoanaerobacter brockii subsp. finni... ILVC_THEP3 - Ketol-acid reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ilvC...	148.0	[0..15]	[151..1]
gi\|242232031, gi... - gi\|242256438\|ref\|ZP_04801329.1\| ketol-acid reductoisomerase [Thermoanaerobacter sp. X513], gi\|242232... ILVC_THEPX - Ketol-acid reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=ilvC PE=3 SV=1	147.0	[0..15]	[151..1]
gi\|37525716, gi\|... - gi\|37525716\|ref\|NP_929060.1\| hypothetical protein plu1781 [Photorhabdus luminescens subsp. laumondii...	147.0	[0..19]	[155..1]
gi\|208732027, gi... - gi\|208815379\|ref\|ZP_03256558.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4045],... gi\|208822108, gi... - gi\|208822108\|ref\|ZP_03262427.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4042],... gi\|209397226, gi... - gi\|209397226\|ref\|YP_002269634.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4115]... gi\|75513418, gi\|... - gi\|75513418\|ref\|ZP_00735822.1\| COG1832: Predicted CoA-binding protein [Escherichia coli 53638], gi\|1... gi\|209918218, gi... - gi\|209918218\|ref\|YP_002292302.1\| hypothetical protein ECSE_1027 [Escherichia coli SE11], gi\|20991147... gi\|75255123, gi\|... - gi\|75255123\|ref\|ZP_00727010.1\| COG1832: Predicted CoA-binding protein [Escherichia coli E22], gi\|193... gi\|215486083, gi... - gi\|215486083\|ref\|YP_002328514.1\| predicted CoA-binding protein with NAD(P)-binding Rossmann-fold dom... gi\|75240584, gi\|... - gi\|75240584\|ref\|ZP_00724501.1\| COG1832: Predicted CoA-binding protein [Escherichia coli F11], gi\|191... gi\|217326359, gi... - gi\|217326359\|ref\|ZP_03442443.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. TW14588]... gi\|191166613, gi... - gi\|75230240\|ref\|ZP_00716737.1\| COG1832: Predicted CoA-binding protein [Escherichia coli B7A], gi\|191... gi\|218360320, gi... - gi\|218553552\|ref\|YP_002386465.1\| putative CoA-binding protein [Escherichia coli IAI1], gi\|218360320\|... gi\|194430208, gi... - gi\|75208522\|ref\|ZP_00708840.1\| COG1832: Predicted CoA-binding protein [Escherichia coli B171], gi\|19... gi\|218364633, gi... - gi\|218557864\|ref\|YP_002390777.1\| putative CoA-binding protein [Escherichia coli S88], gi\|218364633\|e... gi\|168777446, gi... - gi\|187767338\|gb\|EDU31182.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168780912, gi... - gi\|189001391\|gb\|EDU70377.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|13360509, gi\|... - gi\|15830303\|ref\|NP_309076.1\| hypothetical protein ECs1049 [Escherichia coli O157:H7], gi\|13360509\|db... gi\|13360509, gi\|... - gi\|15830303\|ref\|NP_309076.1\| hypothetical protein ECs1049 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372617, gi... - gi\|189372617\|gb\|EDU91033.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|209774362, gi... - pir\|\|G85623 hypothetical protein Z1317 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|110641155, gi... - gi\|110641155\|ref\|YP_668885.1\| hypothetical protein ECP_0971 [Escherichia coli 536], gi\|110342747\|gb\|... gi\|189376530, gi... - gi\|189376530\|gb\|EDU94946.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|170020634, gi... - gi\|170020634\|ref\|YP_001725588.1\| CoA-binding domain-containing protein [Escherichia coli ATCC 8739],... gi\|15800824, gi\|... - gi\|15800824\|ref\|NP_286840.1\| hypothetical protein Z1317 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|187430899, gi... - gi\|187733907\|ref\|YP_001880836.1\| putative CoA-binding protein [Shigella boydii CDC 3083-94], gi\|1874... gi\|195935152 - gi\|195935152\|ref\|ZP_03080534.1\| hypothetical protein EscherichcoliO157_01632 [Escherichia coli O157:... gi\|208808338, gi... - gi\|208808338\|ref\|ZP_03250675.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4206],... gi\|157160486, gi... - gi\|75195154\|ref\|ZP_00705224.1\| COG1832: Predicted CoA-binding protein [Escherichia coli HS], gi\|1571... gi\|218688801, gi... - gi\|218688801\|ref\|YP_002397013.1\| putative CoA-binding protein [Escherichia coli ED1a], gi\|218426365\|... gi\|157156884, gi... - gi\|75190033\|ref\|ZP_00703300.1\| COG1832: Predicted CoA-binding protein [Escherichia coli E24377A], gi... gi\|218694440, gi... - gi\|218694440\|ref\|YP_002402107.1\| putative CoA-binding protein [Escherichia coli 55989], gi\|218351172... gi\|218700514, gi... - gi\|218700514\|ref\|YP_002408143.1\| putative CoA-binding protein [Escherichia coli IAI39], gi\|218370500... gi\|124500115, gi... - gi\|124529160\|ref\|ZP_01700270.1\| CoA-binding domain protein [Escherichia coli B], gi\|124500115\|gb\|EAY... gi\|168751275, gi... - gi\|188014666\|gb\|EDU52788.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|189354360, gi... - gi\|189354360\|gb\|EDU72779.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|168767393, gi... - gi\|189363170\|gb\|EDU81589.1\| putative CoA-binding protein [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|254792165, gi... - gi\|254792165\|ref\|YP_003077002.1\| predicted CoA-binding protein with NAD(P)-binding Rossmann-fold dom...	146.0	[0..19]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGMSALSYT LLNSLEEIMK ETDIAGILTS THTIALVGAS DKPDRPSYRV MKYLLDQGYH  60
   61 VIPVSPKVAG KTLLGQQGYG TLADVPEKVD MVDVFRNSEA AWGVAQEAIA IGAKTLWMQL 120
  121 GVINEQAAVL ARDAGLNVVM DRCPAIEIPR LGLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	2duwA
Description:	No description for 2duwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits