YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051145, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051145, gi|....

Description	E-value	Query Range	Subject Range
gi\|15831020, gi\|... - gi\|15831020\|ref\|NP_309793.1\| putative regulatory protein [Escherichia coli O157:H7], gi\|13361231\|dbj... gi\|25300106, gi\|... - pir\|\|F90849 probable regulatory protein [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|217328024, gi... - gi\|217328024\|ref\|ZP_03444106.1\| conserved domain protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|15831020, gi\|... - gi\|15831020\|ref\|NP_309793.1\| DNA-binding transcriptional regulator DicC [Escherichia coli O157:H7 st... gi\|12514991, gi\|... - gi\|15801492\|ref\|NP_287509.1\| DNA-binding transcriptional regulator DicC [Escherichia coli O157:H7 ED... gi\|168790534, gi... - gi\|189370007\|gb\|EDU88423.1\| conserved domain protein [Escherichia coli O157:H7 str. EC869], gi\|16879... gi\|188998518, gi... - gi\|188998518\|gb\|EDU67508.1\| conserved domain protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|209162066, gi... - gi\|209400666\|ref\|YP_002270198.1\| hypothetical protein ECH74115_1754 [Escherichia coli O157:H7 str. E... gi\|208815108, gi... - gi\|208815108\|ref\|ZP_03256287.1\| conserved domain protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|189359497, gi... - gi\|189359497\|gb\|EDU77916.1\| conserved domain protein [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|254792734, gi... - gi\|254792734\|ref\|YP_003077571.1\| putative regulator of cell division encoded by prophage CP-933O [Es... gi\|168752697, gi... - gi\|188013558\|gb\|EDU51680.1\| conserved domain protein [Escherichia coli O157:H7 str. EC4113], gi\|1687...	137.0	[0..1]	[74..1]
gi\|124498137, gi... - gi\|124532132\|ref\|ZP_01702111.1\| DNA-binding transcriptional regulator [Escherichia coli B], gi\|12449... gi\|169755004, gi... - gi\|170020076\|ref\|YP_001725030.1\| DNA-binding transcriptional regulator DicC [Escherichia coli ATCC 8... DICC_ECOLI - Repressor protein of division inhibition gene dicB - Escherichia coli gi\|157155456, gi... - gi\|157155456\|ref\|YP_001462858.1\| DNA-binding transcriptional regulator DicC [Escherichia coli E24377... EG10228 - Qin prophage; DNA-binding transcriptional regulator for DicB / Transcriptional repressor for dicB, Q... gi\|238900789, gi... - gi\|238900789\|ref\|YP_002926585.1\| Qin prophage; DNA-binding transcriptional regulator for DicB [Esche... EG10228 - Qin prophage; DNA-binding transcriptional regulator for DicB / Transcriptional repressor for dicB, Q... gi\|170081236, gi... - gi\|170081236\|ref\|YP_001730556.1\| Qin prophage; DNA-binding transcriptional regulator for DicB [Esche... gi\|194430681, gi... - gi\|194430681\|ref\|ZP_03063120.1\| repressor protein of division inhibition gene dicB [Escherichia coli... gi\|89108411, gi\|... - gi\|89108411\|ref\|AP_002191.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 subst... gi\|194424649, gi... - gi\|194436617\|ref\|ZP_03068718.1\| repressor protein of division inhibition gene dicB [Escherichia coli... gi\|218360903, gi... - gi\|218554135\|ref\|YP_002387048.1\| DNA-binding transcriptional regulator DicC [Escherichia coli IAI1],...	131.0	[0..1]	[75..1]
gi\|83584898, gi\|... - gi\|83584898\|ref\|ZP_00923556.1\| hypothetical protein Ecol1_01003922 [Escherichia coli 101-1], gi\|1944...	116.0	[0..1]	[74..1]
gi\|75190320 - gi\|75190320\|ref\|ZP_00703587.1\| hypothetical protein EcolE_01003618 [Escherichia coli E24377A] gi\|215264417, gi... - gi\|215486345\|ref\|YP_002328776.1\| DNA-binding transcriptional regulator DicC [Escherichia coli O127:H... gi\|209396753, gi... - gi\|209400538\|ref\|YP_002270258.1\| repressor protein [Escherichia coli O157:H7 str. EC4115], gi\|209396... gi\|208741093, gi... - gi\|208820970\|ref\|ZP_03261290.1\| repressor protein [Escherichia coli O157:H7 str. EC4042], gi\|2087410... gi\|208815386, gi... - gi\|208815386\|ref\|ZP_03256565.1\| repressor protein [Escherichia coli O157:H7 str. EC4045], gi\|2087320... gi\|208724553, gi... - gi\|208811047\|ref\|ZP_03252880.1\| repressor protein [Escherichia coli O157:H7 str. EC4206], gi\|2087245... gi\|170520256, gi... - gi\|170682538\|ref\|YP_001743224.1\| repressor protein [Escherichia coli SMS-3-5], gi\|170520256\|gb\|ACB18... gi\|168778088, gi... - gi\|187766833\|gb\|EDU30677.1\| repressor protein [Escherichia coli O157:H7 str. EC4196], gi\|168778088\|r... gi\|168752814, gi... - gi\|188013510\|gb\|EDU51632.1\| repressor protein [Escherichia coli O157:H7 str. EC4113], gi\|168752814\|r...	115.0	[0..1]	[74..1]
gi\|77972143 - gi\|77972143\|ref\|ZP_00827719.1\| hypothetical protein YfreA_01004085 [Yersinia frederiksenii ATCC 3364...	55.0	[0..1]	[57..1]
gi\|113907450, gi... - gi\|160873891\|ref\|YP_001553207.1\| hypothetical protein Sbal195_0769 [Shewanella baltica OS195], gi\|16...	55.0	[0..1]	[56..1]
gi\|192956661, gi... - gi\|75235187\|ref\|ZP_00719429.1\| hypothetical protein EcolE1_01003050 [Escherichia coli E110019], gi\|1... gi\|75207960 - gi\|75207960\|ref\|ZP_00708394.1\| hypothetical protein EcolB_01004714 [Escherichia coli B171]	53.0	[0..1]	[68..1]
gi\|68517520, gi\|... - gi\|68544780\|ref\|ZP_00584384.1\| hypothetical protein SbalDRAFT_4315 [Shewanella baltica OS155], gi\|68...	50.0	[0..6]	[56..6]
gi\|83631532, gi\|... - gi\|83643489\|ref\|YP_431924.1\| hypothetical protein HCH_00596 [Hahella chejuensis KCTC 2396], gi\|83631...	48.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIDAIAFF GSKTKLANAA GVRLASIAAW GELVPEGRAM RLQEASGGEL QYDPKVYDEY  60
   61 RKAKRPGKVI HENQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	1rzsA
Description:	Solution structure of P22 Cro
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits