YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30040475, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30040475, gi|....

Description	E-value	Query Range	Subject Range
gi\|115513259, gi... - gi\|117624135\|ref\|YP_853048.1\| putative phage lysozyme [Escherichia coli APEC O1], gi\|115513259\|gb\|AB...	228.0	[0..1]	[177..1]
gi\|254161439, gi... - gi\|254161439\|ref\|YP_003044547.1\| predicted lysozyme [Escherichia coli B str. REL606], gi\|253973340\|g... gi\|253324684, gi... - gi\|254288245\|ref\|YP_003053993.1\| predicted lysozyme [Escherichia coli BL21(DE3)], gi\|253977552\|gb\|AC... gi\|242377135, gi... - gi\|251784862\|ref\|YP_002999166.1\| hypothetical protein B21_01346 [Escherichia coli BL21], gi\|24237713... gi\|26107706, gi\|... - gi\|26247305\|ref\|NP_753345.1\| lysozyme from lambdoid prophage Qin [Escherichia coli CFT073], gi\|26107...	227.0	[0..1]	[177..1]
gi\|187428216, gi... - gi\|75179125\|ref\|ZP_00699143.1\| COG3772: Phage-related lysozyme (muraminidase) [Shigella boydii BS512... gi\|218351530, gi... - gi\|218694798\|ref\|YP_002402465.1\| putative membrane-associated lysozyme; Qin prophage [Escherichia co...	226.0	[0..1]	[177..1]
gi\|193066607, gi... - gi\|75255260\|ref\|ZP_00727103.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli E22]...	226.0	[0..1]	[177..1]
gi\|194411913, gi... - gi\|75208719\|ref\|ZP_00709013.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli B171...	225.0	[0..1]	[177..1]
gi\|188494388, gi... - gi\|75511090\|ref\|ZP_00733818.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli 5363...	225.0	[0..1]	[177..1]
gi\|91210513, gi\|... - gi\|91210513\|ref\|YP_540499.1\| putative phage lysozyme [Escherichia coli UTI89], gi\|91072087\|gb\|ABE069... gi\|237705253, gi... - gi\|237705253\|ref\|ZP_04535734.1\| lysozyme protein R [Escherichia sp. 3_2_53FAA], gi\|226900010\|gb\|EEH8...	225.0	[0..1]	[177..1]
gi\|191169223, gi... - gi\|75227482\|ref\|ZP_00714247.1\| COG3772: Phage-related lysozyme (muraminidase) [Escherichia coli B7A]...	225.0	[0..1]	[177..1]

Back

Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKIKYGLS AAVLALIAAG ASAPQILDQF LNEKEGNHTT AYRDGSGIWT ICRGATMVDG  60
   61 KPVIPGMKLS KEKCDQVNAI ERDKALAWVE RNIKVPLTEP QKAGIASFCP YNIGPGKCFP 120
  121 STFYKRLNAG DRKGACEAIR WWIKDVGRDC RIRSNNCYGQ VIRRDQESAL ACWGIDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2anvA
Description:	crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits