YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24112057, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24112057, gi|....

Description	E-value	Query Range	Subject Range
YBEL_ECO57 - Uncharacterized protein YbeL OS=Escherichia coli O157:H7 GN=ybeL PE=4 SV=1 YBEL_ECOL6 - Uncharacterized protein ybeL OS=Escherichia coli O6 GN=ybeL PE=4 SV=1 YBEL_ECOL6 - Uncharacterized protein YbeL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybeL ... gi\|12513547, gi\|... - gi\|15800357\|ref\|NP_286369.1\| hypothetical protein Z0790 [Escherichia coli O157:H7 EDL933], gi\|125135... EG12851 - DUF1451 family protein / DUF1451 family protein gi\|227838463, gi... - gi\|227884377\|ref\|ZP_04002182.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783846... gi\|226898593, gi... - gi\|237707383\|ref\|ZP_04537864.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238899920, gi... - gi\|238899920\|ref\|YP_002925716.1\| hypothetical protein BWG_0514 [Escherichia coli BW2952], gi\|2388604... gi\|251784145, gi... - gi\|251784145\|ref\|YP_002998449.1\| hypothetical protein B21_00601 [Escherichia coli BL21], gi\|24237641... gi\|253774371, gi... - gi\|254287513\|ref\|YP_003053261.1\| hypothetical protein ECD_00612 [Escherichia coli BL21(DE3)], gi\|253... gi\|254160725, gi... - gi\|254160725\|ref\|YP_003043833.1\| hypothetical protein ECB_00612 [Escherichia coli B str. REL606], gi... gi\|254591209, gi... - gi\|254791809\|ref\|YP_003076646.1\| hypothetical protein ECSP_0696 [Escherichia coli O157:H7 str. TW143... gi\|74311179, gi\|... - gi\|74311179\|ref\|YP_309598.1\| hypothetical protein SSON_0597 [Shigella sonnei Ss046], gi\|73854656\|gb\|... gi\|208815360, gi... - gi\|208815360\|ref\|ZP_03256539.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|81240061, gi\|... - gi\|82775913\|ref\|YP_402260.1\| hypothetical protein SDY_0567 [Shigella dysenteriae Sd197], gi\|81240061... gi\|208725563, gi... - gi\|208805762\|ref\|ZP_03248099.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|190905764, gi... - gi\|75237597\|ref\|ZP_00721628.1\| COG2433: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|209398105, gi... - gi\|209398105\|ref\|YP_002269279.1\| hypothetical protein ECH74115_0732 [Escherichia coli O157:H7 str. E... gi\|188487813, gi... - gi\|75511288\|ref\|ZP_00733982.1\| COG2433: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|208737076, gi... - gi\|208822883\|ref\|ZP_03263201.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|215485683, gi... - gi\|215485683\|ref\|YP_002328114.1\| hypothetical protein E2348C_0543 [Escherichia coli O127:H6 str. E23... gi\|209911162, gi... - gi\|209917903\|ref\|YP_002291987.1\| hypothetical protein ECSE_0712 [Escherichia coli SE11], gi\|20991116... gi\|81244499, gi\|... - gi\|82543088\|ref\|YP_407035.1\| hypothetical protein SBO_0507 [Shigella boydii Sb227], gi\|81244499\|gb\|A... gi\|218549782, gi... - gi\|218549782\|ref\|YP_002383573.1\| hypothetical protein EFER_2463 [Escherichia fergusonii ATCC 35469],... gi\|217322546, gi... - gi\|217326325\|ref\|ZP_03442409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|168777614, gi... - gi\|187767179\|gb\|EDU31023.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|194434464, gi... - gi\|83569094\|ref\|ZP_00920554.1\| COG2433: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|168767091, gi... - gi\|189363593\|gb\|EDU82012.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189373522, gi... - gi\|189373522\|gb\|EDU91938.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189002796, gi... - gi\|189002796\|gb\|EDU71782.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|75228100, gi\|... - gi\|75228100\|ref\|ZP_00714771.1\| COG2433: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|169888057, gi... - gi\|170080323\|ref\|YP_001729643.1\| hypothetical protein ECDH10B_0712 [Escherichia coli str. K-12 subst... gi\|193069111, gi... - gi\|75236624\|ref\|ZP_00720712.1\| COG2433: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|189375566, gi... - gi\|189375566\|gb\|EDU93982.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|194421184, gi... - gi\|83584760\|ref\|ZP_00923423.1\| COG2433: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|195939383 - gi\|195939383\|ref\|ZP_03084765.1\| hypothetical protein EscherichcoliO157_23679 [Escherichia coli O157:... gi\|75189681, gi\|... - gi\|75189681\|ref\|ZP_00702948.1\| COG2433: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|170683239, gi... - gi\|170683239\|ref\|YP_001742759.1\| hypothetical protein EcSMS35_0663 [Escherichia coli SMS-3-5], gi\|17... gi\|218557581, gi... - gi\|218557581\|ref\|YP_002390494.1\| hypothetical protein ECS88_0685 [Escherichia coli S88], gi\|21836435... gi\|218359953, gi... - gi\|218553185\|ref\|YP_002386098.1\| hypothetical protein ECIAI1_0627 [Escherichia coli IAI1], gi\|218359... gi\|218694083, gi... - gi\|218694083\|ref\|YP_002401750.1\| hypothetical protein EC55989_0635 [Escherichia coli 55989], gi\|2183... gi\|218426030, gi... - gi\|218688466\|ref\|YP_002396678.1\| hypothetical protein ECED1_0640 [Escherichia coli ED1a], gi\|2184260... gi\|117622859, gi... - gi\|117622859\|ref\|YP_851772.1\| hypothetical protein APECO1_1413 [Escherichia coli APEC O1], gi\|115511... gi\|218431074, gi... - gi\|218703977\|ref\|YP_002411496.1\| hypothetical protein ECUMN_0737 [Escherichia coli UMN026], gi\|21843... EG12851 - DUF1451 family protein / DUF1451 family protein YBEL_ECOLI - Hypothetical protein ybeL - Escherichia coli gi\|89107512, gi\|... - gi\|89107512\|ref\|AP_001292.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|168764678, gi... - gi\|189365385\|gb\|EDU83801.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189354859, gi... - gi\|189354859\|gb\|EDU73278.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|91209691, gi\|... - gi\|91209691\|ref\|YP_539677.1\| hypothetical protein UTI89_C0646 [Escherichia coli UTI89], gi\|91071265\|... gi\|13360139, gi\|... - gi\|15829935\|ref\|NP_308708.1\| hypothetical protein ECs0681 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342464, gi... - gi\|110640872\|ref\|YP_668600.1\| hypothetical protein ECP_0673 [Escherichia coli 536], gi\|110342464\|gb\|...	271.0	[0..1]	[160..1]
gi\|157160138, gi... - gi\|75194826\|ref\|ZP_00704896.1\| COG2433: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	270.0	[0..1]	[160..1]
gi\|187733264, gi... - gi\|75175891\|ref\|ZP_00696078.1\| COG0711: F0F1-type ATP synthase, subunit b [Shigella boydii BS512], g...	270.0	[0..1]	[160..1]
gi\|193063317, gi... - gi\|75258621\|ref\|ZP_00730028.1\| COG2433: Uncharacterized conserved protein [Escherichia coli E22], gi...	270.0	[0..1]	[160..1]
gi\|75209044, gi\|... - gi\|75209044\|ref\|ZP_00709304.1\| COG0711: F0F1-type ATP synthase, subunit b [Escherichia coli B171], g...	266.0	[0..1]	[160..1]
gi\|22125088, gi\|... - gi\|22125088\|ref\|NP_668511.1\| hypothetical protein y1185 [Yersinia pestis KIM], gi\|21957943\|gb\|AAM847... gi\|45435791, gi\|... - gi\|45440932\|ref\|NP_992471.1\| hypothetical protein YP_1102 [Yersinia pestis biovar Microtus str. 9100...	265.0	[0..1]	[160..7]
gi\|62126885, gi\|... - gi\|62179252\|ref\|YP_215669.1\| hypothetical protein SC0682 [Salmonella enterica subsp. enterica serova... gi\|16764030, gi\|... - gi\|16764030\|ref\|NP_459645.1\| hypothetical protein STM0653 [Salmonella typhimurium LT2], gi\|16419166\|... gi\|205271720, gi... - gi\|205351939\|ref\|YP_002225740.1\| hypothetical protein SG0657 [Salmonella enterica subsp. enterica se... gi\|206707922, gi... - gi\|207856119\|ref\|YP_002242770.1\| hypothetical protein SEN0622 [Salmonella enterica subsp. enterica s... gi\|197263643, gi... - gi\|197263643\|ref\|ZP_03163717.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198243003, gi... - gi\|198243003\|ref\|YP_002214641.1\| hypothetical protein SeD_A0757 [Salmonella enterica subsp. enterica... gi\|168465830, gi... - gi\|195631974\|gb\|EDX50494.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194444738, gi... - gi\|194444738\|ref\|YP_002039896.1\| hypothetical protein SNSL254_A0710 [Salmonella enterica subsp. ente... gi\|205330856, gi... - gi\|205330856\|gb\|EDZ17620.1\| alpha helical protein [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|168264414, gi... - gi\|205347115\|gb\|EDZ33746.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161364493, gi... - gi\|161615129\|ref\|YP_001589094.1\| hypothetical protein SPAB_02897 [Salmonella enterica subsp. enteric... gi\|167550809, gi... - gi\|205324193\|gb\|EDZ12032.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238911604 - gi\|238911604\|ref\|ZP_04655441.1\| hypothetical protein SentesTe_10762 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybeL] [protein=hypothetical protein] [protein_id=YP_005236369.1] [location=717062..717535]	263.0	[0..1]	[160..1]
gi\|51595451, gi\|... - gi\|51595451\|ref\|YP_069642.1\| hypothetical protein YPTB1104 [Yersinia pseudotuberculosis IP 32953], g... gi\|25359169 - pir\|\|AG0318 conserved hypothetical protein YPO2611 [imported] - Yersinia pestis (strain CO92) gi\|152959675, gi... - gi\|77632067\|ref\|ZP_00794653.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia pseudotubercul... gi\|16122824, gi\|... - gi\|218929692\|ref\|YP_002347567.1\| hypothetical protein YPO2611 [Yersinia pestis CO92], gi\|16122824\|re... Q66DE2\|Q66DE2_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167468414 - gi\|167468414\|ref\|ZP_02333118.1\| hypothetical protein YpesF_11049 [Yersinia pestis FV-1] gi\|167057702, gi... - gi\|167423532\|ref\|ZP_02315285.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|186894482, gi... - gi\|186894482\|ref\|YP_001871594.1\| hypothetical protein YPTS_1161 [Yersinia pseudotuberculosis PB1/+],... gi\|170025235, gi... - gi\|170025235\|ref\|YP_001721740.1\| hypothetical protein YPK_3014 [Yersinia pseudotuberculosis YPIII], ... gi\|89103085, gi\|... - gi\|89103085\|ref\|ZP_01175679.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia pestis biovar ... gi\|108780392, gi... - gi\|108808479\|ref\|YP_652395.1\| hypothetical protein YPA_2486 [Yersinia pestis Antiqua], gi\|108780392\|... gi\|108811260, gi... - gi\|229901498\|ref\|ZP_04516620.1\| conserved protein [Yersinia pestis Nepal516], gi\|229681427\|gb\|EEO775... gi\|165925191, gi... - gi\|165925191\|ref\|ZP_02221023.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|149365488, gi... - gi\|149365488\|ref\|ZP_01887523.1\| hypothetical protein YPE_0653 [Yersinia pestis CA88-4125], gi\|149291... gi\|145599905, gi... - gi\|145599905\|ref\|YP_001163981.1\| hypothetical protein YPDSF_2642 [Yersinia pestis Pestoides F], gi\|1... gi\|166212438, gi... - gi\|166212438\|ref\|ZP_02238473.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165992623, gi... - gi\|166008241\|ref\|ZP_02229139.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229694524, gi... - gi\|229838158\|ref\|ZP_04458317.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167422503, gi... - gi\|167422503\|ref\|ZP_02314256.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229700873, gi... - gi\|229895950\|ref\|ZP_04511120.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700873\|gb\|EEO... gi\|167398366, gi... - gi\|167398366\|ref\|ZP_02303890.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229688279, gi... - gi\|229898731\|ref\|ZP_04513876.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	263.0	[0..1]	[160..1]
gi\|238786080, gi... - gi\|77957568\|ref\|ZP_00821620.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia bercovieri ATC...	263.0	[0..1]	[160..1]
gi\|162420716, gi... - gi\|77636549\|ref\|ZP_00798622.1\| COG0563: Adenylate kinase and related kinases [Yersinia pestis Angola...	263.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVAQYYRE LVASLNERLR NGERDIDALV EQARERVIKT GELTRTEIDE LTRAVRRDLE  60
   61 EFAMSYEESL KEESDSVFMR VIKESLWQEL ADITDKTQLE WREIFQDLNH HGVYHSGEVV 120
  121 GLGNLVCEKC HFHLPIYTPE VLTLCPKCGY DQFQRRPFEP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.721246
Match:	PF07295.2
Description:	No description for PF07295.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits