YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24050644, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	53 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24050644, gi|....

Description	E-value	Query Range	Subject Range
gi\|36787139, gi\|... - gi\|37527704\|ref\|NP_931049.1\| hypothetical protein plu3844 [Photorhabdus luminescens subsp. laumondii...	77.0	[0..1]	[53..1]
gi\|194432805, gi... - gi\|83570200\|ref\|ZP_00921646.1\| hypothetical protein Sdys1_01001485 [Shigella dysenteriae 1012], gi\|1... gi\|75177590, gi\|... - gi\|75177590\|ref\|ZP_00697671.1\| hypothetical protein SboyB_01002553 [Shigella boydii BS512], gi\|18773... gi\|157080074, gi... - gi\|75189534\|ref\|ZP_00702801.1\| hypothetical protein EcolE_01002819 [Escherichia coli E24377A], gi\|15... gi\|157159993, gi... - gi\|75194686\|ref\|ZP_00704756.1\| hypothetical protein EcolH_01000465 [Escherichia coli HS], gi\|1571599... gi\|75209778, gi\|... - gi\|75209778\|ref\|ZP_00709980.1\| hypothetical protein EcolB_01003076 [Escherichia coli B171], gi\|19442... gi\|170021146, gi... - gi\|170021146\|ref\|YP_001726100.1\| hypothetical protein EcolC_3150 [Escherichia coli ATCC 8739], gi\|16... gi\|191167482, gi... - gi\|75229373\|ref\|ZP_00715928.1\| hypothetical protein EcolB7_01002417 [Escherichia coli B7A], gi\|19116... gi\|209917682, gi... - gi\|209917682\|ref\|YP_002291766.1\| hypothetical protein ECSE_0491 [Escherichia coli SE11], gi\|20991094... gi\|75238218, gi\|... - gi\|75238218\|ref\|ZP_00722219.1\| hypothetical protein EcolF_01003543 [Escherichia coli F11], gi\|191173... gi\|215263618, gi... - gi\|215485546\|ref\|YP_002327977.1\| hypothetical protein E2348C_0401 [Escherichia coli O127:H6 str. E23... gi\|227884521, gi... - gi\|227884521\|ref\|ZP_04002326.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783860... gi\|226898746, gi... - gi\|237707536\|ref\|ZP_04538017.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218553032, gi... - gi\|218553032\|ref\|YP_002385945.1\| hypothetical protein ECIAI1_0469 [Escherichia coli IAI1], gi\|218359... gi\|218364145, gi... - gi\|218557376\|ref\|YP_002390289.1\| hypothetical protein ECS88_0463 [Escherichia coli S88], gi\|21836414... gi\|218688329, gi... - gi\|218688329\|ref\|YP_002396541.1\| hypothetical protein ECED1_0489 [Escherichia coli ED1a], gi\|2184258... gi\|218693928, gi... - gi\|218693928\|ref\|YP_002401595.1\| hypothetical protein EC55989_0479 [Escherichia coli 55989], gi\|2183... gi\|218368608, gi... - gi\|218698622\|ref\|YP_002406251.1\| hypothetical protein ECIAI39_0205 [Escherichia coli IAI39], gi\|2183... gi\|26246480, gi\|... - gi\|26246480\|ref\|NP_752519.1\| hypothetical protein c0585 [Escherichia coli CFT073], gi\|26106878\|gb\|AA... gi\|91209539, gi\|... - gi\|91209539\|ref\|YP_539525.1\| hypothetical protein UTI89_C0493 [Escherichia coli UTI89], gi\|91071113\|... gi\|110640727, gi... - gi\|110640727\|ref\|YP_668455.1\| hypothetical protein ECP_0527 [Escherichia coli 536], gi\|110342319\|gb\|... gi\|124530283, gi... - gi\|124530283\|ref\|ZP_01701002.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499308\|gb... gi\|192959087, gi... - gi\|75239038\|ref\|ZP_00723020.1\| hypothetical protein EcolE1_01000805 [Escherichia coli E110019], gi\|1... gi\|192929180, gi... - gi\|75257889\|ref\|ZP_00729367.1\| hypothetical protein EcolE2_01002372 [Escherichia coli E22], gi\|19306... gi\|188487556, gi... - gi\|75514589\|ref\|ZP_00736844.1\| hypothetical protein Ecol5_01001363 [Escherichia coli 53638], gi\|1884... gi\|82542959, gi\|... - gi\|82542959\|ref\|YP_406906.1\| hypothetical protein SBO_0366 [Shigella boydii Sb227], gi\|81244370\|gb\|A...	74.0	[0..1]	[53..1]
gi\|74311045, gi\|... - gi\|74311045\|ref\|YP_309464.1\| hypothetical protein SSON_0453 [Shigella sonnei Ss046], gi\|73854522\|gb\|...	73.0	[0..1]	[53..1]
gi\|251783975, gi... - gi\|251783975\|ref\|YP_002998279.1\| hypothetical protein B21_00422 [Escherichia coli BL21], gi\|24237624... gi\|253325588, gi... - gi\|254287339\|ref\|YP_003053087.1\| hypothetical protein ECD_00417 [Escherichia coli BL21(DE3)], gi\|253... YBAM_ECOLI - Hypothetical protein ybaM - Escherichia coli gi\|170080051, gi... - gi\|170080051\|ref\|YP_001729371.1\| hypothetical protein ECDH10B_0422 [Escherichia coli str. K-12 subst... gi\|254160535, gi... - gi\|254160535\|ref\|YP_003043643.1\| hypothetical protein ECB_00417 [Escherichia coli B str. REL606], gi... gi\|194423571, gi... - gi\|83587079\|ref\|ZP_00925709.1\| hypothetical protein Ecol1_01001822 [Escherichia coli 101-1], gi\|1944... gi\|89107335, gi\|... - gi\|89107335\|ref\|AP_001115.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG12830 - DUF2496 family protein / DUF2496 family protein EG12830 - DUF2496 family protein / DUF2496 family protein gi\|238862848, gi... - gi\|238899753\|ref\|YP_002925549.1\| hypothetical protein BWG_0347 [Escherichia coli BW2952], gi\|2388628...	73.0	[0..1]	[53..1]
gi\|21957804, gi\|... - gi\|22124962\|ref\|NP_668385.1\| hypothetical protein y1055 [Yersinia pestis KIM], gi\|21957804\|gb\|AAM846... gi\|45440652, gi\|... - gi\|45440652\|ref\|NP_992191.1\| hypothetical protein YP_0803 [Yersinia pestis biovar Microtus str. 9100...	71.0	[0..1]	[49..5]
gi\|209778434, gi... - pir\|\|C85544 hypothetical protein Z0583 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|82775803, gi\|... - gi\|82775803\|ref\|YP_402150.1\| hypothetical protein SDY_0453 [Shigella dysenteriae Sd197], gi\|81239951... gi\|12513333, gi\|... - gi\|15800195\|ref\|NP_286207.1\| hypothetical protein Z0583 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|209400374, gi... - gi\|209400374\|ref\|YP_002269116.1\| hypothetical protein ECH74115_0556 [Escherichia coli O157:H7 str. E... gi\|13359976, gi\|... - gi\|15829773\|ref\|NP_308546.1\| hypothetical protein ECs0519 [Escherichia coli O157:H7], gi\|13359976\|db... gi\|217322701, gi... - gi\|217326480\|ref\|ZP_03442564.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218703749, gi... - gi\|218703749\|ref\|YP_002411268.1\| hypothetical protein ECUMN_0505 [Escherichia coli UMN026], gi\|21843... gi\|195936029 - gi\|195936029\|ref\|ZP_03081411.1\| hypothetical protein EscherichcoliO157_06116 [Escherichia coli O157:... gi\|208808408, gi... - gi\|208808408\|ref\|ZP_03250745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208733065, gi... - gi\|208816417\|ref\|ZP_03257596.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|13359976, gi\|... - gi\|15829773\|ref\|NP_308546.1\| hypothetical protein ECs0519 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208823005, gi... - gi\|208823005\|ref\|ZP_03263323.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|168777163, gi... - gi\|187767536\|gb\|EDU31380.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189003059, gi... - gi\|189003059\|gb\|EDU72045.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168786318, gi... - gi\|189373568\|gb\|EDU91984.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|254591049, gi... - gi\|254791649\|ref\|YP_003076486.1\| hypothetical protein ECSP_0533 [Escherichia coli O157:H7 str. TW143... gi\|189379371, gi... - gi\|189379371\|gb\|EDU97787.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168747857, gi... - gi\|188017624\|gb\|EDU55746.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189357990, gi... - gi\|189357990\|gb\|EDU76409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168760378, gi... - gi\|189369201\|gb\|EDU87617.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168768422, gi... - gi\|189362491\|gb\|EDU80910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g...	71.0	[0..1]	[52..1]
gi\|238791465, gi... - gi\|77979362\|ref\|ZP_00834781.1\| hypothetical protein YintA_01000846 [Yersinia intermedia ATCC 29909],...	69.0	[0..1]	[49..1]
gi\|77635879, gi\|... - gi\|77635879\|ref\|ZP_00797958.1\| hypothetical protein YpesA_01000682 [Yersinia pestis Angola], gi\|1624... gi\|153950633, gi... - gi\|77631953\|ref\|ZP_00794539.1\| hypothetical protein YpseI_01003343 [Yersinia pseudotuberculosis IP 3... gi\|149365026, gi... - gi\|149365026\|ref\|ZP_01887061.1\| hypothetical protein YPE_0151 [Yersinia pestis CA88-4125], gi\|149291... gi\|145211718, gi... - gi\|145600022\|ref\|YP_001164098.1\| hypothetical protein YPDSF_2763 [Yersinia pestis Pestoides F], gi\|1... gi\|186894356, gi... - gi\|186894356\|ref\|YP_001871468.1\| hypothetical protein YPTS_1030 [Yersinia pseudotuberculosis PB1/+],... gi\|169751954, gi... - gi\|170025420\|ref\|YP_001721925.1\| hypothetical protein YPK_3203 [Yersinia pseudotuberculosis YPIII], ... gi\|165936038, gi... - gi\|89104121\|ref\|ZP_01176674.1\| hypothetical protein Ypesb_01001902 [Yersinia pestis biovar Orientali... gi\|108808611, gi... - gi\|108808611\|ref\|YP_652527.1\| hypothetical protein YPA_2620 [Yersinia pestis Antiqua], gi\|108780524\|... gi\|108774775, gi... - gi\|229901358\|ref\|ZP_04516480.1\| hypothetical protein YP516_1043 [Yersinia pestis Nepal516], gi\|22968... Q66DQ5\|Q66DQ5_YERPS - Putative uncharacterized protein ybaM - Yersinia pseudotuberculosis gi\|165927658, gi... - gi\|165927658\|ref\|ZP_02223490.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166205691, gi... - gi\|166212904\|ref\|ZP_02238939.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010977, gi... - gi\|166010977\|ref\|ZP_02231875.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167421485, gi... - gi\|167421485\|ref\|ZP_02313238.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167051963, gi... - gi\|167399459\|ref\|ZP_02304983.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167469128 - gi\|167469128\|ref\|ZP_02333832.1\| hypothetical protein YpesF_14849 [Yersinia pestis FV-1] gi\|167057334, gi... - gi\|167423164\|ref\|ZP_02314917.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229838730, gi... - gi\|229838730\|ref\|ZP_04458889.1\| hypothetical protein YPH_0984 [Yersinia pestis biovar Orientalis str... gi\|51595338, gi\|... - gi\|51595338\|ref\|YP_069529.1\| hypothetical protein YPTB0988 [Yersinia pseudotuberculosis IP 32953], g... gi\|229896117, gi... - gi\|229896117\|ref\|ZP_04511287.1\| hypothetical protein YPS_3929 [Yersinia pestis Pestoides A], gi\|2297... gi\|25511020 - pir\|\|AH0379 conserved hypothetical protein YPO3128 [imported] - Yersinia pestis (strain CO92) gi\|229687700, gi... - gi\|229899298\|ref\|ZP_04514441.1\| hypothetical protein YPF_3767 [Yersinia pestis biovar Orientalis str... gi\|15981066, gi\|... - gi\|218930158\|ref\|YP_002348033.1\| hypothetical protein YPO3128 [Yersinia pestis CO92], gi\|16123290\|re...	69.0	[0..1]	[49..1]
gi\|167990466, gi... - gi\|205330958\|gb\|EDZ17722.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167550994, gi... - gi\|205324282\|gb\|EDZ12121.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161615323, gi... - gi\|161615323\|ref\|YP_001589288.1\| hypothetical protein SPAB_03093 [Salmonella enterica subsp. enteric... gi\|56414365, gi\|... - gi\|56414365\|ref\|YP_151440.1\| hypothetical protein SPA2242 [Salmonella enterica subsp. enterica serov... gi\|238911390 - gi\|238911390\|ref\|ZP_04655227.1\| hypothetical protein SentesTe_09660 [Salmonella enterica subsp. ente... gi\|197262599, gi... - gi\|197262599\|ref\|ZP_03162673.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197212339, gi... - gi\|197248636\|ref\|YP_002145461.1\| hypothetical protein SeAg_B0521 [Salmonella enterica subsp. enteric... gi\|194737252, gi... - gi\|194737252\|ref\|YP_002113511.1\| hypothetical protein SeSA_A0540 [Salmonella enterica subsp. enteric... gi\|194468642, gi... - gi\|194468642\|ref\|ZP_03074626.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205271569, gi... - gi\|205351788\|ref\|YP_002225589.1\| hypothetical protein SG0490 [Salmonella enterica subsp. enterica se... gi\|204930523, gi... - gi\|204930523\|ref\|ZP_03221453.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197939667, gi... - gi\|198245151\|ref\|YP_002214433.1\| hypothetical protein SeD_A0524 [Salmonella enterica subsp. enterica... gi\|197363285, gi... - gi\|197363285\|ref\|YP_002142922.1\| hypothetical protein SSPA2085 [Salmonella enterica subsp. enterica ... gi\|168261082, gi... - gi\|205349937\|gb\|EDZ36568.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205340355, gi... - gi\|205340355\|gb\|EDZ27119.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289468, gi... - gi\|197289468\|gb\|EDY28831.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168231470, gi... - gi\|205333988\|gb\|EDZ20752.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194447689, gi... - gi\|194447689\|ref\|YP_002044513.1\| hypothetical protein SeHA_C0584 [Salmonella enterica subsp. enteric... gi\|194442921, gi... - gi\|194442921\|ref\|YP_002039723.1\| hypothetical protein SNSL254_A0530 [Salmonella enterica subsp. ente... gi\|168818904, gi... - gi\|205343937\|gb\|EDZ30701.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465576, gi... - gi\|195631909\|gb\|EDX50429.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16501752, gi\|... - gi\|25511977\|pir\|\|AC0562 conserved hypothetical protein STY0524 [imported] - Salmonella enterica subs... gi\|214002419 - gi\|214002419\|ref\|ZP_03413154.1\| hypothetical protein Salmonellentericaenterica_19396 [Salmonella ent... gi\|213854535 - gi\|213854535\|ref\|ZP_03382775.1\| hypothetical protein SentesT_10639 [Salmonella enterica subsp. enter... gi\|16759460 - gi\|16759460\|ref\|NP_455077.1\| hypothetical protein STY0524 [Salmonella enterica subsp. enterica serov... gi\|16763860, gi\|... - gi\|16763860\|ref\|NP_459475.1\| hypothetical protein STM0480 [Salmonella typhimurium LT2], gi\|16418988\|... gi\|29138400, gi\|... - gi\|29142768\|ref\|NP_806110.1\| hypothetical protein t2380 [Salmonella enterica subsp. enterica serovar... gi\|213419542 - gi\|213419542\|ref\|ZP_03352608.1\| hypothetical protein Salmonentericaenterica_17781 [Salmonella enteri... gi\|213162894 - gi\|213162894\|ref\|ZP_03348604.1\| hypothetical protein Salmoneentericaenterica_23876 [Salmonella enter... gi\|213021351 - gi\|213021351\|ref\|ZP_03335798.1\| hypothetical protein Salmonelentericaenterica_00586 [Salmonella ente... gi\|206707762, gi... - gi\|207855959\|ref\|YP_002242610.1\| hypothetical protein SEN0461 [Salmonella enterica subsp. enterica s... gi\|213649088 - gi\|213649088\|ref\|ZP_03379141.1\| hypothetical protein SentesTy_18483 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybaM] [protein=hypothetical protein] [protein_id=YP_005236178.1] [location=complement(539629..... gi\|213622909 - gi\|213622909\|ref\|ZP_03375692.1\| hypothetical protein SentesTyp_37582 [Salmonella enterica subsp. ent... gi\|213582628 - gi\|213582628\|ref\|ZP_03364454.1\| hypothetical protein SentesTyph_16063 [Salmonella enterica subsp. en... gi\|213427139 - gi\|213427139\|ref\|ZP_03359889.1\| hypothetical protein SentesTyphi_16920 [Salmonella enterica subsp. e...	68.0	[0..1]	[53..1]
gi\|224582317, gi... - gi\|224582317\|ref\|YP_002636115.1\| hypothetical protein SPC_0494 [Salmonella enterica subsp. enterica ... gi\|62179091, gi\|... - gi\|62179091\|ref\|YP_215508.1\| hypothetical protein SC0521 [Salmonella enterica subsp. enterica serova...	67.0	[0..1]	[53..1]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLENAPDDV KLAVDLIVLL EENQIPASTV LRALDIVKRD YEKKLTHDDE AEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits