YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24111562, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111562, gi|....

Description	E-value	Query Range	Subject Range
gi\|75230519 - gi\|75230519\|ref\|ZP_00717000.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189218 - gi\|75189218\|ref\|ZP_00702485.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c...	230.0	[0..1]	[136..1]
gi\|254037535, gi... - gi\|254037535\|ref\|ZP_04871612.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684064... gi\|237704275, gi... - gi\|237704275\|ref\|ZP_04534756.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|81244133, gi\|... - gi\|82542722\|ref\|YP_406669.1\| hypothetical protein SBO_0108 [Shigella boydii Sb227], gi\|81244133\|gb\|A... gi\|83569700 - gi\|83569700\|ref\|ZP_00921150.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella dyse... gi\|91070761, gi\|... - gi\|91209187\|ref\|YP_539173.1\| hypothetical protein UTI89_C0132 [Escherichia coli UTI89], gi\|91070761\|... gi\|75176532 - gi\|75176532\|ref\|ZP_00696669.1\| COG3112: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75194334 - gi\|75194334\|ref\|ZP_00704404.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75210446 - gi\|75210446\|ref\|ZP_00710597.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|13359579, gi\|... - gi\|15829377\|ref\|NP_308150.1\| hypothetical protein ECs0123 [Escherichia coli O157:H7], gi\|13359579\|db... gi\|75233846 - gi\|75233846\|ref\|ZP_00718316.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209746270, gi... - gi\|7449778\|pir\|\|G64734 yacL protein - Escherichia coli (strain K-12), gi\|25325229\|pir\|\|C85495 hypoth... gi\|75258888 - gi\|75258888\|ref\|ZP_00730278.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15799803, gi\|... - gi\|15799803\|ref\|NP_285815.1\| hypothetical protein Z0129 [Escherichia coli O157:H7 EDL933], gi\|125128... gi\|75511994 - gi\|75511994\|ref\|ZP_00734589.1\| COG3112: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|16128112, gi\|... - gb\|AAC73230.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|81239556, gi\|... - gi\|82775408\|ref\|YP_401754.1\| hypothetical protein SDY_0026 [Shigella dysenteriae Sd197], gi\|81239556...	229.0	[0..1]	[136..1]
gi\|227838108, gi... - gi\|227884970\|ref\|ZP_04002775.1\| YacL protein [Escherichia coli 83972], gi\|227838108\|gb\|EEJ48574.1\| Y... gi\|26246059, gi\|... - gi\|26246059\|ref\|NP_752098.1\| hypothetical protein c0148 [Escherichia coli CFT073], gi\|26106456\|gb\|AA...	228.0	[0..1]	[136..1]
gi\|224582006, gi... - gi\|224582006\|ref\|YP_002635804.1\| hypothetical protein SPC_0173 [Salmonella enterica subsp. enterica ... gi\|62178730, gi\|... - gi\|62178730\|ref\|YP_215147.1\| hypothetical protein SC0160 [Salmonella enterica subsp. enterica serova...	215.0	[0..2]	[135..17]
gi\|22124685, gi\|... - gi\|22124685\|ref\|NP_668108.1\| hypothetical protein y0772 [Yersinia pestis KIM], gi\|21957498\|gb\|AAM843...	199.0	[0..17]	[135..32]
YACL_ECOLU - UPF0231 protein YacL OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yacL PE=3 SV=1 YACL_ECO7I - UPF0231 protein YacL OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yacL PE=3 SV=1 YACL_SHISS - UPF0231 protein YacL OS=Shigella sonnei (strain Ss046) GN=yacL PE=3 SV=1 YACL_ECO55 - UPF0231 protein YacL OS=Escherichia coli (strain 55989 / EAEC) GN=yacL PE=3 SV=1 EG12605 - UPF0231 family protein / UPF0231 family protein, function unknown YACL_ECO45 - UPF0231 protein YacL OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yacL PE=3 SV=1 gi\|124530581, gi... - gi\|124530581\|ref\|ZP_01701184.1\| Uncharacterised conserved protein UCP006287 [Escherichia coli B], gi... YACL_ECO5E - UPF0231 protein YacL OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yacL PE=3 SV=1 gi\|208820988, gi... - gi\|208820988\|ref\|ZP_03261308.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208814030, gi... - gi\|208814030\|ref\|ZP_03255359.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|21238972, gi\|... - gi\|89107000\|ref\|AP_000780.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|212... gi\|208727775, gi... - gi\|208807974\|ref\|ZP_03250311.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... YACL_ECO8A - UPF0231 protein YacL OS=Escherichia coli O8 (strain IAI1) GN=yacL PE=3 SV=1 gi\|217320735, gi... - gi\|217324514\|ref\|ZP_03440598.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... EG12605 - UPF0231 family protein / UPF0231 family protein, function unknown YACL_ECO27 - UPF0231 protein YacL OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yacL PE=3 SV=1 YACL_ECOSE - UPF0231 protein YacL OS=Escherichia coli (strain SE11) GN=yacL PE=3 SV=1 YACL_ECOBW - UPF0231 protein YacL OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yacL PE=3 SV=1 gi\|253325897, gi... - gi\|254287042\|ref\|YP_003052790.1\| hypothetical protein ECD_00118 [Escherichia coli BL21(DE3)], gi\|253... gi\|251783679, gi... - gi\|251783679\|ref\|YP_002997983.1\| hypothetical protein B21_00117 [Escherichia coli BL21], gi\|24237595... gi\|254590654, gi... - gi\|254791254\|ref\|YP_003076091.1\| hypothetical protein ECSP_0120 [Escherichia coli O157:H7 str. TW143... sp\|B7UIG7\|YACL_ECO27 - UPF0231 protein yacL OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yacL PE=3 SV=1 gi\|254160239, gi... - gi\|254160239\|ref\|YP_003043347.1\| hypothetical protein ECB_00118 [Escherichia coli B str. REL606], gi... YACL_ECO57 - UPF0231 protein YacL OS=Escherichia coli O157:H7 GN=yacL PE=3 SV=1 YACL_ECOHS - UPF0231 protein YacL OS=Escherichia coli O9:H4 (strain HS) GN=yacL PE=3 SV=1 gi\|161984991 - gi\|161984991\|ref\|YP_406669.2\| hypothetical protein SBO_0108 [Shigella boydii Sb227] YACL_ECO24 - UPF0231 protein YacL OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yacL PE=3 SV=1 gi\|161950172 - gi\|161950172\|ref\|YP_401754.2\| hypothetical protein SDY_0026 [Shigella dysenteriae Sd197] gi\|161367656 - gi\|161367656\|ref\|NP_285815.2\| hypothetical protein Z0129 [Escherichia coli O157:H7 EDL933] gi\|193063267, gi... - gi\|193063267\|ref\|ZP_03044358.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192931175\|... gi\|190903641, gi... - gi\|191166390\|ref\|ZP_03028222.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190903641\|... gi\|188489146, gi... - gi\|188493947\|ref\|ZP_03001217.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848914... YACL_SHIB3 - UPF0231 protein YacL OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yacL PE=3 SV=1 gi\|162139817 - gi\|162139817\|ref\|NP_308150.2\| hypothetical protein ECs0123 [Escherichia coli O157:H7 str. Sakai] gi\|195938199 - gi\|195938199\|ref\|ZP_03083581.1\| hypothetical protein EscherichcoliO157_17491 [Escherichia coli O157:... gi\|194418352, gi... - gi\|194433424\|ref\|ZP_03065703.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... YACL_ECOLI - UPF0231 protein yacL - Escherichia coli gi\|194428265, gi... - gi\|194428265\|ref\|ZP_03060807.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413640... gi\|193071233, gi... - gi\|193071233\|ref\|ZP_03052154.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192955... gi\|187767830, gi... - gi\|187767830\|gb\|EDU31674.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189360690, gi... - gi\|189360690\|gb\|EDU79109.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189356990, gi... - gi\|189356990\|gb\|EDU75409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|162138502 - gi\|162138502\|ref\|YP_539173.2\| hypothetical protein UTI89_C0132 [Escherichia coli UTI89] gi\|170122689, gi... - gi\|170768585\|ref\|ZP_02903038.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... YACL_ECOLC - UPF0231 protein YacL OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yacL PE=3 SV=1 YACL_ECODH - UPF0231 protein YacL OS=Escherichia coli (strain K12 / DH10B) GN=yacL PE=3 SV=1 gi\|168801454, gi... - gi\|189376384\|gb\|EDU94800.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168782008, gi... - gi\|189000382\|gb\|EDU69368.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g...	197.0	[0..17]	[136..1]
YACL_ECOL5 - UPF0231 protein YacL OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yacL PE=3 SV=1	196.0	[0..17]	[136..1]
YACL_ECO81 - UPF0231 protein YacL OS=Escherichia coli O81 (strain ED1a) GN=yacL PE=3 SV=1 YACL_ECOL6 - UPF0231 protein yacL OS=Escherichia coli O6 GN=yacL PE=3 SV=2 YACL_ECOL6 - UPF0231 protein YacL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yacL PE=3 SV=...	196.0	[0..17]	[136..1]
YACL_SHIFL - UPF0231 protein YacL OS=Shigella flexneri GN=yacL PE=3 SV=1 gi\|161486548 - gi\|161486548\|ref\|NP_835855.2\| hypothetical protein S0118 [Shigella flexneri 2a str. 2457T] gi\|161485949 - gi\|161485949\|ref\|NP_706072.2\| hypothetical protein SF0116 [Shigella flexneri 2a str. 301]	195.0	[0..17]	[136..1]
Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis GN=YPTB0717 PE=3 SV=1 gi\|161484870 - gi\|161484870\|ref\|NP_668108.2\| hypothetical protein y0772 [Yersinia pestis KIM] Y3414_YERPE - UPF0231 protein YPO3414/y0772/YP_0271 OS=Yersinia pestis GN=YPO3414 PE=3 SV=1 gi\|165991107, gi... - gi\|166010200\|ref\|ZP_02231098.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165922477, gi... - gi\|165925865\|ref\|ZP_02221697.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167398697, gi... - gi\|167398697\|ref\|ZP_02304221.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204693, gi... - gi\|166214062\|ref\|ZP_02240097.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167423825, gi... - gi\|167423825\|ref\|ZP_02315578.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167420817, gi... - gi\|167420817\|ref\|ZP_02312570.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y717_YERPS - UPF0231 protein YPTB0717 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB0717 PE=3... gi\|45440131, gi\|... - gi\|45440131\|ref\|NP_991670.1\| hypothetical protein YP_0271 [Yersinia pestis biovar Microtus str. 9100... gi\|15981341, gi\|... - gi\|218930431\|ref\|YP_002348306.1\| hypothetical protein YPO3414 [Yersinia pestis CO92], gi\|16123563\|re... gi\|89104444, gi\|... - gi\|89104444\|ref\|ZP_01176987.1\| COG3112: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|153997543, gi... - gi\|153997543\|ref\|ZP_02022643.1\| hypothetical protein YPE_4002 [Yersinia pestis CA88-4125], gi\|149289... Y2916_YERPA - UPF0231 protein YPA_2916 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2916 PE=3 SV=1 Y2941_YERPP - UPF0231 protein YPDSF_2941 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2941 PE=3 SV=1 Y674_YERPN - UPF0231 protein YPN_0674 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_0674 PE=3 SV=1 Y1027_YERPG - UPF0231 protein YpAngola_A1027 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1027 PE=3... Y747_YERPB - UPF0231 protein YPTS_0747 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_0747 PE=... Y3358_YERP3 - UPF0231 protein YpsIP31758_3358 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y3486_YERPY - UPF0231 protein YPK_3486 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3486 PE=3... gi\|229695420, gi... - gi\|229839054\|ref\|ZP_04459213.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229896533, gi... - gi\|229896533\|ref\|ZP_04511701.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700607\|gb\|EEO... gi\|229687110, gi... - gi\|229899618\|ref\|ZP_04514759.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	191.0	[0..17]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCDFGALP GAEEHTMDYE FLRDITGVVK VRMSMGHEVV GHWFNEEVKE NLALLDEVEQ  60
   61 AAHALKGSER SWQRAGHEYT LWMDAEEVMV RANQLEFAGD EMEEGMNYYD EESLSLCGVE 120
  121 DFLQVVAAYR NFVQQK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.657577
Match:	PF06062.2
Description:	No description for PF06062.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits