YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542561, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542561, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	226.0	[0..3]	[238..103]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	226.0	[0..1]	[238..1]
gi\|48860348, gi\|... - gi\|67873291\|ref\|ZP_00503570.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	225.0	[0..1]	[236..1]
gi\|220931316, gi... - gi\|89209804\|ref\|ZP_01188198.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	225.0	[0..1]	[238..1]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	224.0	[0..1]	[237..1]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	223.0	[0..3]	[238..2]
gi\|22299907, gi\|... - gi\|22299907\|ref\|NP_683154.1\| two-component response regulator [Thermosynechococcus elongatus BP-1], ...	222.0	[0..2]	[235..7]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	222.0	[0..1]	[235..1]
gi\|75701824, gi\|... - gi\|75908099\|ref\|YP_322395.1\| two component transcriptional regulator [Anabaena variabilis ATCC 29413...	221.0	[0..2]	[244..3]
gi\|51857333, gi\|... - gi\|51893644\|ref\|YP_076335.1\| two-component response regulator [Symbiobacterium thermophilum IAM 1486...	221.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGTSHILIV DDDSDIRDLL GKFLRRHGFE ASLAKDGSEM QAILLKQAVD LVILDIMMPG  60
   61 DDGLTLCRQM RANSTIPILM LTAISEEVDR ILGLEMGADD YLSKPFNPRE LLARVRAILR 120
  121 RSQGGGGSLN GIGTNERVIY EFAGWSLDPA ERRLKSPDSL EITLSSGEFD LLHALVQRSQ 180
  181 QVLSRDKLLD LTKNREAGPF DRSIDIQISR LRHKLEQDPK NPQIIKTIRG GGYVLAAEVV 240
  241 RKQRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits