YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29655239, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29655239, gi|....

Description	E-value	Query Range	Subject Range
gi\|75857576, gi\|... - gi\|75857576\|ref\|ZP_00765190.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Vibrio sp. Ex25], g...	145.0	[0..4]	[93..430]
gi\|91226112, gi\|... - gi\|91226112\|ref\|ZP_01261002.1\| NAD(P) transhydrogenase subunit alpha [Vibrio alginolyticus 12G01], g...	145.0	[0..4]	[93..430]
gi\|89073747, gi\|... - gi\|89073747\|ref\|ZP_01160261.1\| NAD(P) transhydrogenase subunit alpha [Photobacterium sp. SKA34], gi\|...	145.0	[0..3]	[93..428]
gi\|90440845, gi\|... - gi\|90577759\|ref\|ZP_01233570.1\| NAD(P) transhydrogenase subunit alpha [Vibrio angustum S14], gi\|90440...	145.0	[0..3]	[93..428]
gi\|153836900, gi... - gi\|153836900\|ref\|ZP_01989567.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio parahaemolyticus AQ38... gi\|28809223 - gi\|28809223\|dbj\|BAC62265.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio parahaemolyticus RIMD 221... gi\|28809223, gi\|... - gi\|28900777\|ref\|NP_800432.1\| NAD(P) transhydrogenase subunit alpha [Vibrio parahaemolyticus RIMD 221...	144.0	[0..4]	[93..430]
gi\|37201014, gi\|... - gi\|37676472\|ref\|NP_936868.1\| NAD(P) transhydrogenase subunit alpha [Vibrio vulnificus YJ016], gi\|372...	144.0	[0..4]	[93..474]
gi\|84375427, gi\|... - gi\|84393928\|ref\|ZP_00992669.1\| NAD(P) transhydrogenase subunit alpha [Vibrio splendidus 12B01], gi\|8...	143.0	[0..4]	[92..429]
gi\|90412639, gi\|... - gi\|90412639\|ref\|ZP_01220641.1\| NAD(P) transhydrogenase subunit alpha [Photobacterium profundum 3TCK]...	142.0	[0..3]	[93..429]
gi\|229516564, gi... - gi\|229516564\|ref\|ZP_04406011.1\| NAD(P) transhydrogenase alpha subunit [Vibrio cholerae RC9], gi\|2293... gi\|229605817, gi... - gi\|229605817\|ref\|YP_002876521.1\| NAD(P) transhydrogenase alpha subunit [Vibrio cholerae MJ-1236], gi... gi\|11252971 - pir\|\|D82444 NAD(P) transhydrogenase, alpha chain VCA0563 [imported] - Vibrio cholerae (strain N16961... gi\|15601322, gi\|... - gi\|9657972\|gb\|AAF96465.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio cholerae O1 biovar eltor st... gi\|254849724, gi... - gi\|75831475\|ref\|ZP_00760738.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Vibrio cholerae MO1... gi\|227119937, gi... - gi\|75825383\|ref\|ZP_00754819.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Vibrio cholerae O39... gi\|75814420, gi\|... - gi\|75814420\|ref\|ZP_00745012.1\| COG3288: NAD/NADP transhydrogenase alpha subunit [Vibrio cholerae V52... gi\|121591177, gi... - gi\|121591177\|ref\|ZP_01678481.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio cholerae 2740-80], gi... gi\|153223280, gi... - gi\|153223280\|ref\|ZP_01953765.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio cholerae MAK 757], gi... gi\|126510201, gi... - gi\|153819252\|ref\|ZP_01971919.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio cholerae NCTC 8457], ... gi\|153822855, gi... - gi\|229509613\|ref\|ZP_04399095.1\| NAD(P) transhydrogenase alpha subunit [Vibrio cholerae B33], gi\|2293... gi\|227812131, gi... - gi\|227812131\|ref\|YP_002812141.1\| NAD(P) transhydrogenase, alpha subunit [Vibrio cholerae M66-2], gi\|... gi\|229506267, gi... - gi\|229506267\|ref\|ZP_04395776.1\| NAD(P) transhydrogenase alpha subunit [Vibrio cholerae BX 330286], g...	142.0	[0..4]	[91..425]
gi\|46916005, gi\|... - gi\|54302581\|ref\|YP_132574.1\| NAD(P) transhydrogenase subunit alpha [Photobacterium profundum SS9], g...	142.0	[0..3]	[93..429]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELIAALYI VMLAAFAGYE IIGRVPSILH TPLMSGTNFI HGIVLIGAMI VLASAQTPLI  60
   61 RVIGFIAVLI ATINAAGGYV VTLRMLAMFK TSQDKDKNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits