YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542496, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542496, gi|....

Description	E-value	Query Range	Subject Range
gi\|113170456, gi... - gi\|113170456\|ref\|YP_717248.1\| AtpH [Ostreococcus tauri], gi\|112806863\|emb\|CAL36370.1\| AtpH [Ostreoco...	97.0	[0..5]	[88..19]
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	97.0	[0..8]	[82..207]
gi\|33863738, gi\|... - gi\|33863738\|ref\|NP_895298.1\| ATP synthase subunit C [Prochlorococcus marinus str. MIT 9313], gi\|3363... gi\|123962475, gi... - gi\|124022189\|ref\|YP_001016496.1\| F0F1 ATP synthase subunit C [Prochlorococcus marinus str. MIT 9303]...	96.0	[0..5]	[88..40]
gi\|74004280 - gi\|74004280\|ref\|XP_545452.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	95.0	[0..8]	[82..319]
gi\|32398077, gi\|... - gi\|32473397\|ref\|NP_866391.1\| F0F1 ATP synthase subunit C [Rhodopirellula baltica SH 1], gi\|32398077\|...	89.0	[0..5]	[90..21]
gi\|38104104, gi\|... - gi\|39944994\|ref\|XP_362034.1\| hypothetical protein MG04479.4 [Magnaporthe grisea 70-15], gb\|EAA50720....	87.0	[0..17]	[80..89]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	86.0	[0..8]	[82..255]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	85.0	[0..4]	[82..120]
gi\|2662061\|dbj\|B... - proton-translocating ATPase, c subunit [Ruminococcus albus] gi\|2662061 - gi\|2662061\|dbj\|BAA23683.1\| proton-translocating ATPase, c subunit [Ruminococcus albus]	84.0	[0..3]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAQLIASV QGLSAIAAGL FIGLAAMGTA IGFGMLGGKF LEGVARQPEL STMLMIRMFL  60
   61 MAGLVDAFAA ISLVMGLILI FARNPFLNAV VEAATRATGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits