YRC Public Data Repository - Protein Structure Prediction

Protein:	AROK_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROK_COXBU.

Description	E-value	Query Range	Subject Range
AROK_PSYWF - Shikimate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=aroK PE=3 SV=1	152.0	[0..1]	[178..1]
AROK_RALSO - Shikimate kinase OS=Ralstonia solanacearum GN=aroK PE=3 SV=1 AROK_RALSO - Shikimate kinase OS=Ralstonia solanacearum (strain GMI1000) GN=aroK PE=3 SV=1	151.0	[0..7]	[173..5]
gi\|76810842, gi\|... - gi\|76810842\|ref\|YP_335093.1\| shikimate kinase [Burkholderia pseudomallei 1710b], gi\|76580295\|gb\|ABA4...	149.0	[0..2]	[173..19]
gi\|83719637, gi\|... - gi\|83719637\|ref\|YP_443528.1\| shikimate kinase [Burkholderia thailandensis E264], gi\|83653462\|gb\|ABC3...	149.0	[0..2]	[173..19]
AROK_CUPPJ - Shikimate kinase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=aroK PE=3 SV=1	148.0	[0..1]	[173..1]
gi\|94312198, gi\|... - gi\|94312198\|ref\|YP_585408.1\| shikimate kinase [Ralstonia metallidurans CH34], gi\|93356050\|gb\|ABF1013...	148.0	[0..6]	[173..36]
gi\|67663370, gi\|... - gi\|67663370\|ref\|ZP_00460653.1\| Shikimate kinase [Burkholderia cenocepacia HI2424], gi\|67103213\|gb\|EA...	147.0	[0..2]	[173..10]
AROK_PSYAR - Shikimate kinase - Psychrobacter arcticum AROK_PSYA2 - Shikimate kinase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=aroK PE=3 SV=1	147.0	[0..1]	[175..1]
AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=aroK PE=3 SV=1 AROK_VIBPA - Shikimate kinase OS=Vibrio parahaemolyticus GN=aroK PE=3 SV=1 gi\|91227283, gi\|... - gi\|91227283\|ref\|ZP_01261708.1\| shikimate kinase I [Vibrio alginolyticus 12G01], gi\|91188677\|gb\|EAS74...	147.0	[0..4]	[175..3]
AROK_PSYCK - Shikimate kinase OS=Psychrobacter cryohalolentis (strain K5) GN=aroK PE=3 SV=1	146.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNLTNIYL IGLMGAGKTS VGSQLAKLTK RILYDSDKEI EKRTGADIAW IFEMEGEAGF  60
   61 RRREREMIEA LCKLDNIILA TGGGVVLDEK NRQQISETGV VIYLTASIDT QLKRIGQKGE 120
  121 MRRPLFIKNN SKEKLQQLNE IRKPLYQAMA DLVYPTDDLN PRQLATQILV DIKQTYSDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1kagA
Description:	Shikimate kinase (AroK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: