YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542294, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542294, gi|....

Description	E-value	Query Range	Subject Range
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	236.0	[0..1]	[213..1]
gi\|95926957, gi\|... - gi\|95926957\|ref\|ZP_01309726.1\| hypothetical protein CburR_01001266 [Coxiella burnetii RSA 331], gi\|1...	229.0	[0..1]	[215..1]
gi\|77958968 - gi\|77958968\|ref\|ZP_00822993.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	228.0	[0..6]	[213..3]
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	226.0	[0..6]	[214..2]
gi\|77960046, gi\|... - gi\|77960046\|ref\|ZP_00823945.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	226.0	[0..6]	[213..2]
gi\|88861328, gi\|... - gi\|88861328\|ref\|ZP_01135959.1\| phosphoribosylglycinamide formyltransferase 1 [Pseudoalteromonas tuni...	225.0	[0..3]	[212..1]
gi\|90020540, gi\|... - gi\|90020540\|ref\|YP_526367.1\| phosphoribosylglycinamide formyltransferase [Saccharophagus degradans 2...	224.0	[0..1]	[212..1]
gi\|120599231, gi... - gi\|120599231\|ref\|YP_963805.1\| phosphoribosylglycinamide formyltransferase [Shewanella sp. W3-18-1], ... gi\|77808587, gi\|... - gi\|77816465\|ref\|ZP_00815651.1\| Phosphoribosylglycinamide formyltransferase [Shewanella putrefaciens ...	224.0	[0..4]	[213..3]
gi\|56460763, gi\|... - gi\|56460763\|ref\|YP_156044.1\| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...	224.0	[0..6]	[213..2]
gi\|82498183, gi\|... - gi\|82498183\|ref\|ZP_00883694.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. MR-4], gi... gi\|113889387, gi... - gi\|78691619\|ref\|ZP_00856225.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. MR-7], gi... gi\|117920987, gi... - gi\|78688083\|ref\|ZP_00852806.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. ANA-3], g...	223.0	[0..7]	[213..6]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNREPLPIVV LISGNGTNLQ AIIGAIQKGL AIEIRAVISN RADAYGLKRA QQADIPTHII  60
   61 PHEEFPSRTD FESTLQKTID HYDPKLIVLA GFMRKLGKAF VSHYSGRMIN IHPSLLPKYT 120
  121 GLNTHERALA AGETEHGVSV HYVTEDLDAG PLICQARLSI TPQDTPETLK TRVHALEHII 180
  181 YPEVLSWFAA GRLNYHNNQV FLDGKPLAKS GHAFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.154902
Match:	1c3eA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: