YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29655019, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29655019, gi|....

Description	E-value	Query Range	Subject Range
gi\|227554982, gi... - gi\|227554982\|ref\|ZP_03985029.1\| possible calcium-transporting ATPase [Enterococcus faecalis HH22], g... gi\|29375457, gi\|... - gi\|29375457\|ref\|NP_814611.1\| cation transporter E1-E2 family ATPase [Enterococcus faecalis V583], gi... gi\|238830480, gi... - gi\|238856880\|ref\|ZP_04647139.1\| cation-transporting ATPase PacL [Enterococcus faecalis TUSoD Ef11], ... gi\|229306037, gi... - gi\|229548808\|ref\|ZP_04437533.1\| possible calcium-transporting ATPase [Enterococcus faecalis ATCC 292... gi\|229546716, gi... - gi\|229546716\|ref\|ZP_04435441.1\| possible calcium-transporting ATPase [Enterococcus faecalis TX1332],...	179.0	[0..3]	[257..421]
gi\|119719115, gi... - gi\|119719115\|ref\|YP_919610.1\| ATPase, P-type (transporting), HAD superfamily, subfamily IC [Thermofi...	179.0	[0..3]	[257..427]
gi\|48823768 - ref\|ZP_00285265.1\| COG0474: Cation transport ATPase [Enterococcus faecium] gi\|68194063, gi\|... - gi\|69249895\|ref\|ZP_00605061.1\| Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hyd...	179.0	[0..3]	[257..421]
gi\|19918508, gi\|... - gi\|20093165\|ref\|NP_619240.1\| sodium/potassium-transporting ATPase, alpha subunit [Methanosarcina ace...	178.0	[0..3]	[255..451]
gi\|71540913, gi\|... - gi\|71540913\|ref\|ZP_00662736.1\| Calcium-translocating P-type ATPase, PMCA-type [Syntrophomonas wolfei...	178.0	[0..1]	[254..419]
gi\|83572652, gi\|... - gi\|83589738\|ref\|YP_429747.1\| ATPase, E1-E2 type [Moorella thermoacetica ATCC 39073], gi\|83572652\|gb\|...	177.0	[0..2]	[253..465]
gi\|86554856, gi\|... - gi\|86606314\|ref\|YP_475077.1\| calcium-translocating P-type ATPase, PMCA-type [Synechococcus sp. JA-3-... gi\|86606314 - gi\|86606314\|ref\|YP_475077.1\| calcium-translocating P-type ATPase, PMCA-type [Cyanobacteria bacterium...	176.0	[0..3]	[251..459]
gi\|242256158, gi... - gi\|242256158\|ref\|ZP_04801054.1\| calcium-translocating P-type ATPase, PMCA-type [Thermoanaerobacter s... gi\|166853564, gi... - gi\|167039324\|ref\|YP_001662309.1\| calcium-translocating P-type ATPase, PMCA-type [Thermoanaerobacter ...	175.0	[0..3]	[252..455]
gi\|89148804, gi\|... - gi\|89203174\|ref\|ZP_01181868.1\| ATPase, E1-E2 type [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	175.0	[0..3]	[254..432]
gi\|76796204, gi\|... - gi\|76796204\|ref\|ZP_00778571.1\| ATPase, E1-E2 type:Calcium-translocating P-type ATPase, PMCA-type [Th... gi\|241883984, gi... - gi\|241903677\|ref\|ZP_04788397.1\| calcium-translocating P-type ATPase, PMCA-type [Thermoanaerobacter b...	175.0	[0..3]	[252..455]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAMPWRITT PIDAVIFDCD GTLSQIEGID HLAEINNVDS EVRLLTETAM NLTGITADIY  60
   61 RKRLDLVNPT KDQVDQLDEQ YYANLTPDAA EIISILHNLN KTVYVISAGI QAAVEAFAKR 120
  121 LGIPTSHVFA VAVYFDGKGR YLNYEHQSPL TYQLGKRKVI EALRLNHHRF VYVGDGMNDI 180
  181 EAANLAERFI GYGGAYYRSH LAEMCDYYIK SRTLAPMLPL SLTLEEFERL SQVEKTLYQK 240
  241 GLKQINEGNV LINRTEFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1nnlA
Description:	Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoserine phosphatase activity	2.609399110972	bayes_pls_golite062009
catalytic activity	1.55296860681783	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.117331448391929	bayes_pls_golite062009
hydrolase activity	0.01837003348146	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: