YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542262, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542262, gi|....

Description	E-value	Query Range	Subject Range
gi\|52306809, gi\|... - gi\|52424757\|ref\|YP_087894.1\| ribonuclease T [Mannheimia succiniciproducens MBEL55E], gi\|52306809\|gb\|...	185.0	[0..8]	[206..17]
gi\|56179912, gi\|... - gi\|56460902\|ref\|YP_156183.1\| ribonuclease T [Idiomarina loihiensis L2TR], gi\|56179912\|gb\|AAV82634.1\|...	183.0	[0..1]	[206..1]
RNT_HAES1 - Ribonuclease T OS=Haemophilus somnus (strain 129Pt) GN=rnt PE=3 SV=1	182.0	[0..8]	[206..11]
gi\|238724931, gi... - gi\|77975303\|ref\|ZP_00830839.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	182.0	[0..4]	[206..14]
gi\|53728911 - gi\|53728911\|ref\|ZP_00134639.2\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|165875739, gi... - gi\|165975638\|ref\|YP_001651231.1\| ribonuclease T [Actinobacillus pleuropneumoniae serovar 3 str. JL03... RNT_ACTP2 - Ribonuclease T OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rnt PE=3 SV=1	182.0	[0..1]	[206..1]
gi\|229694272, gi... - gi\|229837906\|ref\|ZP_04458065.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEX... gi\|22125847, gi\|... - gi\|22125847\|ref\|NP_669270.1\| ribonuclease T [Yersinia pestis KIM], gi\|21958778\|gb\|AAM85521.1\|AE01379... gi\|229688513, gi... - gi\|229898469\|ref\|ZP_04513615.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. Ind... gi\|229701955, gi... - gi\|229895067\|ref\|ZP_04510244.1\| ribonuclease T (RNase T) [Yersinia pestis Pestoides A], gi\|229701955... gi\|16122605, gi\|... - gi\|218929473\|ref\|YP_002347348.1\| ribonuclease T [Yersinia pestis CO92], gi\|16122605\|ref\|NP_405918.1\|... gi\|45436823, gi\|... - gi\|45441960\|ref\|NP_993499.1\| ribonuclease T [Yersinia pestis biovar Microtus str. 91001], gi\|4543682... gi\|229680644, gi... - gi\|229902309\|ref\|ZP_04517429.1\| ribonuclease T (RNase T) [Yersinia pestis Nepal516], gi\|229680644\|gb... RNT_YERPE - Ribonuclease T OS=Yersinia pestis GN=rnt PE=3 SV=1 gi\|149292120, gi... - gi\|149365707\|ref\|ZP_01887742.1\| ribonuclease T [Yersinia pestis CA88-4125], gi\|149292120\|gb\|EDM42194...	181.0	[0..4]	[206..3]
RNT_PHOLL - Ribonuclease T OS=Photorhabdus luminescens subsp. laumondii GN=rnt PE=3 SV=1 RNT_PHOLL - Ribonuclease T OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) G...	181.0	[0..1]	[206..1]
gi\|77959189, gi\|... - gi\|77959189\|ref\|ZP_00823211.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|77961718, gi\|... - gi\|77961718\|ref\|ZP_00825550.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	180.0	[0..4]	[206..14]
RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rnt PE=3 SV=1 RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis GN=rnt PE=3 SV=1	180.0	[0..4]	[206..3]
gi\|85675063, gi\|... - gi\|89108494\|ref\|AP_002274.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110], gi... gi\|238900868, gi... - gi\|238900868\|ref\|YP_002926664.1\| ribonuclease T (RNase T) [Escherichia coli BW2952], gi\|238863473\|gb... RNT_ECOLI - Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T) - Escherichia coli EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing gi\|169889150, gi... - gi\|170081315\|ref\|YP_001730635.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]...	180.0	[0..3]	[220..2]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNNNKIYS LKDRFSGYLP VVVDIETGGL EPLKNPLLEI AAVLVEVNKE GQLCQGELFA  60
   61 CHVLPFEGAA LDPASLEITR IDPYHPFRFA VDEKKALQDL FAFVEKAVNV AQCRRAVLVG 120
  121 HNAHFDLTFI QAAMKRCKLK KSPFHAFTCF DTATLAAIVF GKTVLAKALR AANLPFDKKE 180
  181 AHSAIYDAKC AAELFCKITN QIDGHLKKPS GSCSRHSREL VLED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2is3A
Description:	No description for 2is3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits