YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654947, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654947, gi|....

Description	E-value	Query Range	Subject Range
gi\|165975879, gi... - gi\|165975879\|ref\|YP_001651472.1\| putative glycosyltransferase [Actinobacillus pleuropneumoniae serov... gi\|189914843, gi... - gi\|190149712\|ref\|YP_001968237.1\| UDP-glucose--lipooligosaccharideglucosyltransferase [Actinobacillus... gi\|126207903, gi... - gi\|126207903\|ref\|YP_001053128.1\| UDP-glucose--lipooligosaccharide glucosyltransferase [Actinobacillu... gi\|32035666 - gi\|32035666\|ref\|ZP_00135567.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Actin...	164.0	[0..1]	[251..1]
gi\|48869021, gi\|... - gi\|68249231\|ref\|YP_248343.1\| UDP-glucose--lipooligosaccharide glucosyltransferase [Haemophilus influ...	164.0	[0..1]	[250..1]
gi\|37704463 - gi\|37704463\|gb\|AAR01536.1\| WaaE [Haemophilus parasuis] gi\|12721668, gi\|... - gi\|15603171\|ref\|NP_246244.1\| hypothetical protein PM1306 [Pasteurella multocida subsp. multocida str...	164.0	[0..1]	[253..1]
gi\|42630918 - gi\|42630918\|ref\|ZP_00156456.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Haemo...	164.0	[0..1]	[253..1]
Y653_HAEIN - Uncharacterized glycosyltransferase HI_0653 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121... Y653_HAEIN - Uncharacterized glycosyltransferase HI_0653 OS=Haemophilus influenzae GN=HI_0653 PE=3 SV=1	163.0	[0..1]	[250..1]
gi\|18762492 - gi\|18762492\|gb\|AAL78071.1\| glucosyl-transferase [Proteus mirabilis]	162.0	[0..2]	[253..5]
gi\|53732486 - gi\|53732486\|ref\|ZP_00349496.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Haemo...	161.0	[0..1]	[250..1]
gi\|77961972 - gi\|77961972\|ref\|ZP_00825799.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	159.0	[0..2]	[252..5]
gi\|34101538, gi\|... - gi\|34495683\|ref\|NP_899898.1\| beta-1,4- glucosyltransferase [Chromobacterium violaceum ATCC 12472], g...	159.0	[0..4]	[253..5]
gi\|77958465 - gi\|77958465\|ref\|ZP_00822498.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	159.0	[0..2]	[252..5]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSVYIIA YNQITKIEAA IKSVLWADEV VVVDSHSTDG TTELAEKLGA RVVQVPFRGF  60
   61 GDLRNQAVAA CQYDWIFSLD SDERCTPAAR DEILSIINSN DALDIYKIPR KNRFMGRWIK 120
  121 HGGWYPDYRQ PQLFRKNALT YVPDVVHENY RCHSNKPMGY LKNPIWQIPF EDLSEMMHKA 180
  181 NRYSTLGVDR LKKKYGKASM FRAITHMSWT FIKVYIVKFG FLDGWPGLVI AMGHSYGAFY 240
  241 RYAKFYEQER CQRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits