YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654934, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654934, gi|....

Description	E-value	Query Range	Subject Range
gi\|94491733, gi\|... - gi\|94491733\|ref\|ZP_01298943.1\| hypothetical protein CburD_01001126 [Coxiella burnetii Dugway 7E9-12]...	423.0	[0..1]	[274..1]
gi\|70610240 - gi\|70610240\|gb\|AAZ05387.1\| TraI [Salmonella enterica] gi\|4512517, gi\|9... - gi\|9507520\|ref\|NP_052527.1\| hypothetical protein ColIb-P9_p081 [Plasmid ColIb-P9], gi\|4512517\|dbj\|BA... gi\|75256104, gi\|... - gi\|75256104\|ref\|ZP_00727808.1\| hypothetical protein EcolE2_01003938 [Escherichia coli E22], gi\|19306... gi\|194447210, gi... - gi\|194447210\|ref\|YP_002043937.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|194447119, gi... - gi\|194447119\|ref\|YP_002039146.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|209915232, gi... - gi\|209922054\|ref\|YP_002296127.1\| TraI protein [Escherichia coli SE11], gi\|209915232\|dbj\|BAG80305.1\| ...	398.0	[0..7]	[272..1]
gi\|20521607\|dbj\|... - lipoprotein [Salmonella typhimurium], lipoprotein [Salmonella typhimurium] gi\|4903109 - gi\|4903109\|dbj\|BAA77994.1\| lipoprotein [Plasmid R64] gi\|32470239, gi\|... - gi\|32470239\|ref\|NP_863463.1\| lipoprotein [Salmonella typhimurium], gi\|20521607\|dbj\|BAB91671.1\| lipop... gi\|189360483, gi... - gi\|189403482\|ref\|ZP_02795665.2\| lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|189360483\|gb\|... gi\|189402617, gi... - gi\|189402617\|ref\|ZP_02783565.2\| lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|189354654\|gb\|...	397.0	[0..7]	[272..1]
gi\|51038822 - gi\|51038822\|gb\|AAT94202.1\| TraI [Escherichia coli]	391.0	[0..7]	[271..1]
gi\|38176548, gi\|... - gi\|38201725\|ref\|NP_938092.1\| hypothetical protein pADAP_07 [Serratia entomophila], gi\|38176548\|gb\|AA...	381.0	[0..7]	[268..1]
gi\|37682031, gi\|... - gi\|38638133\|ref\|NP_943243.1\| conjugative transfer protein [Erwinia amylovora], gi\|37682031\|gb\|AAQ979...	367.0	[0..23]	[267..15]
gi\|27261336, gi\|... - gi\|27383483\|ref\|NP_775013.1\| hypothetical protein pCTX-M3_054 [Citrobacter freundii], gi\|27261336\|gb... gi\|216967782, gi... - gi\|216967782\|ref\|YP_002333290.1\| TraI [Klebsiella pneumoniae], gi\|215397954\|gb\|ACJ65231.1\| TraI [Kle... tr\|I3W4Q1\|I3W4Q1... - IncI1 plasmid conjugative transfer protein TraI OS=Serratia marcescens PE=4 SV=1	367.0	[0..23]	[267..15]
tr\|Q877M5\|Q877M5... - Relaxase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=traI PE=4 SV=1 gi\|29171518, gi\|... - gi\|29171591\|ref\|NP_808637.1\| traI protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|29171518...	363.0	[0..7]	[267..1]
gi\|2895279 - gi\|2895279\|gb\|AAC38180.1\| DotC [Legionella pneumophila] gi\|148358590, gi... - gi\|148358590\|ref\|YP_001249797.1\| DotC [Legionella pneumophila str. Corby], gi\|148280363\|gb\|ABQ54451.... gi\|52842881, gi\|... - gi\|52842881\|ref\|YP_096680.1\| DotC [Legionella pneumophila subsp. pneumophila str. Philadelphia 1], g...	357.0	[0..21]	[269..17]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRFQLLKTI AIATFTTLLL TGCATRSTAD EPPLAAMGYV NLNSLPPGSG QINNIREQAL  60
   61 RETATMLGAR GALALRAVHI DAALEKQATY LDHLFDFNQL LLKHNVLPPV IVESQANLNL 120
  121 ADDDTIRTAD KTYKIVADAR FVTAPPTWRS YLWLSYKKPD LPSATLLPKD KSEAQVWNFY 180
  181 LKQGWQNGLQ QAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIFAANLNRL KRDYLGMVLY RKLLAQGMIT SPVVAKVDLG VTGDANQIRI NDEIMRITAQ  60
   61 SALQPDSSHW NPVLTDGASS P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits