YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542193, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542193, gi|....

Description	E-value	Query Range	Subject Range
gi\|46398749 - gi\|46398749\|gb\|AAS92060.1\| IcmQ protein [Legionella pneumophila]	282.0	[0..56]	[225..2]
gi\|52840689, gi\|... - gi\|52840689\|ref\|YP_094488.1\| IcmQ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1], g...	281.0	[0..56]	[225..19]
gi\|53750264, gi\|... - gi\|54296479\|ref\|YP_122848.1\| hypothetical protein lpp0510 [Legionella pneumophila str. Paris], gi\|53... gi\|46398757 - gi\|46398757\|gb\|AAS92064.1\| IcmQ protein [Legionella pneumophila]	280.0	[0..56]	[225..11]
gi\|148282712, gi... - gi\|148360939\|ref\|YP_001252146.1\| IcmQ [Legionella pneumophila str. Corby], gi\|148282712\|gb\|ABQ56800.... gi\|53753269, gi\|... - gi\|54293437\|ref\|YP_125852.1\| hypothetical protein lpl0486 [Legionella pneumophila str. Lens], gi\|537... gi\|46398751, gi\|... - pir\|\|T18327 icmQ protein - Legionella pneumophila, gi\|46398769\|gb\|AAS92070.1\| IcmQ protein [Legionel...	279.0	[0..56]	[225..11]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFDLSNLR LNAKNEHLKQ QLIECVDEQK AQFLQSAEVF YAKARRTEAD YRHLCEAIIQ  60
   61 ATGQVLSAAN WEESLFLRNT LKPIKKLYEE ALALKEKLDG EQAGQAFTTP ALTENKVKLY 120
  121 VSLYQSNGHD LKQWALQLAS LESYMVGRPI YQNEADAMQA IRQKLSQLSE ACVVVAVDQS 180
  181 KIISQENRSR KDRLGNLLTT VMPNAIKSEN IIEFIHQGKR YHYVNQAREL ILKTSETN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.677781
Match:	PF09475.1
Description:	No description for PF09475.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits