YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542185, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542185, gi|....

Description	E-value	Query Range	Subject Range
gi\|38343986, gi\|... - gi\|50922621\|ref\|XP_471671.1\| OSJNBa0041M21.10 [Oryza sativa (japonica cultivar-group)], gi\|38343994\|...	215.0	[0..11]	[211..744]
gi\|46398537 - gi\|46398537\|gb\|AAS91954.1\| IcmG protein [Legionella pneumophila]	205.0	[0..43]	[243..44]
gi\|53750272, gi\|... - gi\|54296487\|ref\|YP_122856.1\| hypothetical protein lpp0518 [Legionella pneumophila str. Paris], gi\|53... gi\|46398543, gi\|... - gi\|46398553\|gb\|AAS91962.1\| IcmG protein [Legionella pneumophila], gi\|46398543\|gb\|AAS91957.1\| IcmG pr...	203.0	[0..43]	[243..44]
gi\|52627808, gi\|... - gi\|52840697\|ref\|YP_094496.1\| IcmG (DotF) [Legionella pneumophila subsp. pneumophila str. Philadelphi... gi\|46398551, gi\|... - pir\|\|T18335 icmG protein - Legionella pneumophila, gi\|46398551\|gb\|AAS91961.1\| IcmG protein [Legionel...	203.0	[0..43]	[243..44]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIENQKTIG DDEYQYPNEE YVAETTPPDE QQPAEPKPAN FFVRFVQNNK RITAVIAVVL  60
   61 IVLVAFKLMS SHRSKSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPPPPAQPV AQQPVQSVSA PDPEMMSKLD ALKQDEQSSQ TTISQLQNQL QDVRNQLNQT  60
   61 SVQQSQLNQA IAALVDQMKQ LGQSIQSEET KKSAPAKKSA PTAPPVVFHL KAIVPGRAWI 120
  121 ISNDGLSESV SVGDPVPQYG TVKVVDANRG MVLMSSGKVI GYGANDR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1ic2A
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits