YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542182, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542182, gi|....

Description	E-value	Query Range	Subject Range
gi\|164685811, gi... - gi\|164685811\|ref\|ZP_01945875.2\| IcmJ protein [Coxiella burnetii 'MSU Goat Q177'], gi\|164601327\|gb\|EA... gi\|165919478, gi... - gi\|165919478\|ref\|ZP_02219498.1\| IcmJ protein [Coxiella burnetii RSA 334], gi\|165916893\|gb\|EDR35497.1... gi\|154357013, gi... - gi\|94491753\|ref\|ZP_01298963.1\| hypothetical protein CburD_01001147 [Coxiella burnetii Dugway 7E9-12]... gi\|161831194, gi... - gi\|95928063\|ref\|ZP_01310814.1\| hypothetical protein CburR_01000227 [Coxiella burnetii RSA 331], gi\|1...	345.0	[0..2]	[212..1]
gi\|53750275, gi\|... - gi\|54296490\|ref\|YP_122859.1\| hypothetical protein lpp0521 [Legionella pneumophila str. Paris], gi\|53... gi\|46398575, gi\|... - gi\|46398575\|gb\|AAS91973.1\| IcmJ protein [Legionella pneumophila], gi\|46398559\|gb\|AAS91965.1\| IcmJ pr...	307.0	[0..7]	[205..10]
gi\|52840700, gi\|... - gi\|52840700\|ref\|YP_094499.1\| IcmJ (DotN) [Legionella pneumophila subsp. pneumophila str. Philadelphi...	305.0	[0..7]	[205..16]
gi\|54293448, gi\|... - gi\|54293448\|ref\|YP_125863.1\| hypothetical protein lpl0497 [Legionella pneumophila str. Lens], gi\|537... gi\|46398573, gi\|... - pir\|\|T18338 icmJ protein - Legionella pneumophila, gi\|46398587\|gb\|AAS91979.1\| IcmJ protein [Legionel...	304.0	[0..7]	[205..10]
gi\|46398561, gi\|... - gi\|46398581\|gb\|AAS91976.1\| IcmJ protein [Legionella pneumophila], gi\|46398561\|gb\|AAS91966.1\| IcmJ pr... gi\|148282701, gi... - gi\|148360928\|ref\|YP_001252135.1\| IcmJ (DotN) [Legionella pneumophila str. Corby], gi\|148282701\|gb\|AB...	304.0	[0..7]	[205..10]
gi\|134287812, gi... - gi\|67547905\|ref\|ZP_00425802.1\| hypothetical protein Bcep1808DRAFT_1681 [Burkholderia vietnamiensis G...	236.0	[0..32]	[200..67]
gi\|159120383, gi... - gi\|94493514\|ref\|ZP_01300717.1\| hypothetical protein Rgryl_01000037 [Rickettsiella grylli], gi\|160871...	196.0	[0..7]	[199..4]
gi\|33414072, gi\|... - gi\|73853210\|ref\|YP_308706.1\| hypothetical protein LH0035 [Escherichia coli], gi\|33414072\|gb\|AAQ17627...	167.0	[0..76]	[183..154]

Back

Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMALRNIQLS ASDSNWRLFM VRKADTAFLA FQAKVHERDN YTCQYCGFRA KRYMEIVNLD  60
   61 GNYRNNRLTN LATACGFCSQ CFFLDAVGKG ESGGGTLIYL PEMTQGELNA LCHVLFTSIA 120
  121 T

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.57
Match:	2qgpA
Description:	No description for 2qgpA was found.

Predicted Domain #2

Region A:
Residues: [122-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSSATEARN IYRSFKLRSQ IIEQQLGEGL SHPALLGQLL VDTKTEKMSL LKDALETKLR  60
   61 LLPDLARFSV QVEAWARDGL EELGSVYNTR D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits