YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654878, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654878, gi|....

Description	E-value	Query Range	Subject Range
gi\|1072396 - gi\|1072396\|emb\|CAA63735.1\| phaB [Sinorhizobium meliloti]	143.0	[0..5]	[131..105]
gi\|17934424, gi\|... - gi\|17934424\|ref\|NP_531214.1\| pH adaption potassium efflux system protein [Agrobacterium tumefaciens ... gi\|25522541 - pir\|\|AD2639 pH adaption potassium efflux system protein [imported] - Agrobacterium tumefaciens (stra...	138.0	[0..5]	[131..844]
PHAAB_RHIME - Probable K(+)/H(+) antiporter subunit A/B OS=Rhizobium meliloti (strain 1021) GN=phaAB PE=3 SV=2 PHAB_RHIME, PHAA... - (Q52978) Probable K(+)/H(+) antiporter subunit A/B (pH adaptation potassium efflux system protein A/...	136.0	[0..5]	[131..847]
gi\|77459532, gi\|... - gi\|77459532\|ref\|YP_349039.1\| putative monovalent cation/H+ antiporter subunit A [Pseudomonas fluores...	135.0	[0..5]	[131..820]
gi\|82737749, gi\|... - gi\|82737749\|ref\|ZP_00900594.1\| multicomponent potassium-proton antiporter, subunit A/B, putative [Ps...	135.0	[0..5]	[131..820]
gi\|95111548 - gi\|95111548\|emb\|CAK16268.1\| putative multicomponent potassium-proton antiporter, subunit A/B (PhaAB)... gi\|95111548, gi\|... - gi\|95111548\|emb\|CAK16268.1\| putative multicomponent potassium-proton antiporter, subunit A/B (PhaAB)...	135.0	[0..5]	[131..820]
gi\|26988954, gi\|... - gi\|26988954\|ref\|NP_744379.1\| putative monovalent cation/H+ antiporter subunit A [Pseudomonas putida ...	135.0	[0..5]	[131..820]
gi\|30180890, gi\|... - gi\|30249853\|ref\|NP_841923.1\| putative monovalent cation/H+ antiporter subunit A [Nitrosomonas europa...	135.0	[0..5]	[131..821]
gi\|94415912, gi\|... - gi\|94415912\|ref\|ZP_01295744.1\| hypothetical protein PaerP_01002241 [Pseudomonas aeruginosa PA7], gi\|...	135.0	[0..4]	[131..787]
gi\|189021461, gi... - gi\|189022887\|ref\|YP_001932628.1\| putative monovalent cation/H+ antiporter subunit A [Brucella abortu... gi\|83269619 - gi\|83269619\|ref\|YP_418910.1\| putative monovalent cation/H+ antiporter subunit A [Brucella melitensis... gi\|82939893 - gi\|82939893\|emb\|CAJ12904.1\| Glutelin:NADH-Ubiquinone oxidoreductase (complex I), chain 5/L, N-termin... gi\|62317636, gi\|... - gi\|62317636\|ref\|YP_223489.1\| putative monovalent cation/H+ antiporter subunit A [Brucella abortus bv... gi\|254698916 - gi\|254698916\|ref\|ZP_05160744.1\| putative monovalent cation/H+ antiporter subunit A [Brucella abortus... gi\|254732363 - gi\|254732363\|ref\|ZP_05190941.1\| putative monovalent cation/H+ antiporter subunit A [Brucella abortus... gi\|237817183, gi... - gi\|237817183\|ref\|ZP_04596175.1\| monovalent cation:proton antiporter [Brucella abortus str. 2308 A], ... gi\|254691132 - gi\|254691132\|ref\|ZP_05154386.1\| putative monovalent cation/H+ antiporter subunit A [Brucella abortus...	135.0	[0..5]	[131..823]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLILYTAS RFLLAIMLLF SLWVLFRGHN SPGGGFIAGL ISASAFALYL ITHGSKDLRR  60
   61 LLRFSLSSLL AIGLTVAVLA GLIALIFGKT FLTGIWLILT THFKLGTPLL FDVGIYLVVL 120
  121 SSTLIIMIAL EEGAG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.537602
Match:	PF04039.4
Description:	No description for PF04039.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits