YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654877, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654877, gi|....

Description	E-value	Query Range	Subject Range
gi\|90585842, gi\|... - gi\|90585842\|ref\|ZP_01241548.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|110332129 - gi\|110332129\|gb\|ABG67112.1\| MrpC [Staphylococcus aureus] gi\|90583830, gi\|... - gi\|90583830\|ref\|ZP_01239580.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|150373832, gi... - gi\|151221032\|ref\|YP_001331854.1\| putative monovalent cation/H+ antiporter subunit C [Staphylococcus ...	127.0	[0..2]	[119..21]
gi\|89100283, gi\|... - gi\|89100283\|ref\|ZP_01173149.1\| hypothetical protein B14911_24666 [Bacillus sp. NRRL B-14911], gi\|890...	125.0	[0..1]	[114..1]
gi\|83361314, gi\|... - gi\|83368988\|ref\|ZP_00913847.1\| multicomponent K+:H+ antiporter subunit C [Rhodobacter sphaeroides AT...	125.0	[0..1]	[112..1]
gi\|77465721, gi\|... - gi\|77465721\|ref\|YP_355224.1\| putative monovalent cation/H+ antiporter subunit C [Rhodobacter sphaero... gi\|126464200, gi... - gi\|83374443\|ref\|ZP_00919215.1\| multicomponent K+:H+ antiporter subunit C [Rhodobacter sphaeroides AT...	124.0	[0..1]	[113..1]
gi\|52081657, gi\|... - gi\|52787042\|ref\|YP_092871.1\| putative monovalent cation/H+ antiporter subunit C [Bacillus lichenifor...	123.0	[0..1]	[113..1]
gi\|25345111, gi\|... - pir\|\|AG2688 Na+/H+ antiporter mnhC [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir... gi\|17739291, gi\|... - gi\|17934819\|ref\|NP_531609.1\| Na+/H+ antiporter [Agrobacterium tumefaciens str. C58], gi\|17739291\|gb\|...	123.0	[0..1]	[117..1]
gi\|23012007 - gi\|23012007\|ref\|ZP_00052201.1\| COG1006: Multisubunit Na+/H+ antiporter, MnhC subunit [Magnetospirill...	122.0	[0..1]	[117..1]
gi\|115423079, gi... - gi\|187478493\|ref\|YP_786517.1\| K(+)/H(+) antiporter subunit C (pH adaptation potassium efflux system ...	121.0	[0..1]	[110..1]
MRPC_BACPF - Na(+)/H(+) antiporter subunit C OS=Bacillus pseudofirmus GN=mrpC PE=1 SV=1 gi\|6650385 - gi\|6650385\|gb\|AAF21814.1\|AF097740_3 multiple resistance and pH regulation related protein C [Bacillu... MRPC_BACPE - Na(+)/H(+) antiporter subunit C OS=Bacillus pseudofirmus (strain OF4) GN=mrpC PE=1 SV=1	121.0	[0..1]	[112..1]
gi\|94491775, gi\|... - gi\|94491775\|ref\|ZP_01298985.1\| hypothetical protein CburD_01001170 [Coxiella burnetii Dugway 7E9-12]...	121.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLFCWMIG GLFAISIYLL LSQQLMRWLF GIVILSSSTN FVLLIVGRLS QVPPFVSPEK  60
   61 TSSLASVANP LPQALILTAI VIGFGLLSFA LVLVRKVWRQ FKTLDSDKLR LAEPVPHREK 120
  121 IAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.823909
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits