YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654874, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654874, gi|....

Description	E-value	Query Range	Subject Range
gi\|75676842, gi\|... - gi\|75676842\|ref\|YP_319263.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter winogra...	88.0	[0..1]	[88..1]
gi\|91799480, gi\|... - gi\|92116586\|ref\|YP_576315.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter hamburg...	88.0	[0..1]	[88..1]
gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g... gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g...	88.0	[0..4]	[96..10]
gi\|84712334, gi\|... - gi\|84712334\|ref\|ZP_01020246.1\| protein F of Na+/H+ antiporter of putative pH adaptation potassium ef...	86.0	[0..1]	[88..1]
gi\|85698762, gi\|... - gi\|85714315\|ref\|ZP_01045303.1\| potassium efflux system protein [Nitrobacter sp. Nb-311A], gi\|8569876...	86.0	[0..1]	[88..1]
gi\|25522150, gi\|... - pir\|\|AB2689 Na+/H+ antiporter mnhF [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir... gi\|15155908, gi\|... - gi\|17934822\|ref\|NP_531612.1\| Na+/H+ antiporter [Agrobacterium tumefaciens str. C58], gi\|17739294\|gb\|...	85.0	[0..2]	[88..4]
gi\|33574042 - gi\|33574042\|emb\|CAE38365.1\| pH adaptation potassium efflux system protein F [Bordetella parapertussi... gi\|33597614 - gi\|33597614\|ref\|NP_885257.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella parapert... gi\|33602017, gi\|... - gi\|33602017\|ref\|NP_889577.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella bronchis... gi\|33572416, gi\|... - gi\|33592768\|ref\|NP_880412.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella pertussi...	85.0	[0..1]	[88..2]
gi\|66766796, gi\|... - gi\|66766796\|ref\|YP_241558.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas campest... gi\|21229919, gi\|... - gi\|21229919\|ref\|NP_635836.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas campest... gi\|167731632, gi... - gi\|188989872\|ref\|YP_001901882.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas cam...	83.0	[0..4]	[89..6]
gi\|58583691, gi\|... - gi\|58583691\|ref\|YP_202707.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas oryzae ...	83.0	[0..3]	[89..5]
gi\|116873748, gi... - gi\|116873748\|ref\|YP_850529.1\| putative monovalent cation/H+ antiporter subunit F [Listeria welshimer... gi\|254901155, gi... - gi\|254901155\|ref\|ZP_05261079.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|153198355, gi... - gi\|254831193\|ref\|ZP_05235848.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254914058, gi... - gi\|254914058\|ref\|ZP_05264070.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|133726235, gi... - gi\|254873694\|ref\|ZP_05246404.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|133729255, gi... - gi\|254829552\|ref\|ZP_05234239.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|153180485, gi... - gi\|254938373\|ref\|ZP_05270070.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|46908556, gi\|... - gi\|46908556\|ref\|YP_014945.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocytoge... gi\|254933447, gi... - gi\|254933447\|ref\|ZP_05266806.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|25367051, gi\|... - pir\|\|AG1372 proteins involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lm... gi\|16415004, gi\|... - pir\|\|AE1742 protein involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lin... gi\|16804421 - gi\|16804421\|ref\|NP_465906.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocytoge... gi\|16801544 - gi\|16801544\|ref\|NP_471812.1\| putative monovalent cation/H+ antiporter subunit F [Listeria innocua Cl... gi\|47095862, gi\|... - gi\|47095862\|ref\|ZP_00233466.1\| Na+/H+ antiporter component F, putative [Listeria monocytogenes str. ... gi\|225877397, gi... - gi\|226224935\|ref\|YP_002759042.1\| a(+)/H(+) antiporter subunit F (Multiple resistance and pH homeosta... gi\|47018621, gi\|... - gi\|47092967\|ref\|ZP_00230747.1\| Na+/H+ antiporter component F, putative [Listeria monocytogenes str. ... gi\|254826356 - gi\|254826356\|ref\|ZP_05231357.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254854466 - gi\|254854466\|ref\|ZP_05243814.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254880413 - gi\|254880413\|ref\|ZP_05253123.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254992239 - gi\|254992239\|ref\|ZP_05274429.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255017389 - gi\|255017389\|ref\|ZP_05289515.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255022713 - gi\|255022713\|ref\|ZP_05294699.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255027066 - gi\|255027066\|ref\|ZP_05299052.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255029806 - gi\|255029806\|ref\|ZP_05301757.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255522394 - gi\|255522394\|ref\|ZP_05389631.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|217963512, gi... - gi\|217963512\|ref\|YP_002349190.1\| Na(+)/H(+) antiporter subunit F (Multiple resistance and pHhomeosta... gi\|224500597 - gi\|224500597\|ref\|ZP_03668946.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|224503728 - gi\|224503728\|ref\|ZP_03672035.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt...	83.0	[0..3]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFGVSIFY VPLVILCLAV VACFTRMVIG PALSDRVIAL DLTASLLISI IAVYSLISKQ  60
   61 AVYIDVVIAL ALIVFLGTVA FAQYIEWQRY KKIKKEKRDD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.657577
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits