YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542029, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542029, gi|....

Description	E-value	Query Range	Subject Range
gi\|91189725, gi\|... - gi\|91225605\|ref\|ZP_01260679.1\| rod shape-determining protein MreC [Vibrio alginolyticus 12G01], gi\|9...	312.0	[0..3]	[277..2]
gi\|28807700 - gi\|28807700\|dbj\|BAC60953.1\| rod shape-determining protein MreC [Vibrio parahaemolyticus RIMD 2210633... gi\|149746699, gi... - gi\|153839775\|ref\|ZP_01992442.1\| rod shape-determining protein MreC [Vibrio parahaemolyticus AQ3810],... gi\|28899464, gi\|... - gi\|28899464\|ref\|NP_799069.1\| rod shape-determining protein MreC [Vibrio parahaemolyticus RIMD 221063...	312.0	[0..3]	[291..2]
gi\|151938191, gi... - gi\|75856308\|ref\|ZP_00763938.1\| COG1792: Cell shape-determining protein [Vibrio sp. Ex25], gi\|2542292...	311.0	[0..3]	[292..2]
gi\|46914798, gi\|... - gi\|54310357\|ref\|YP_131377.1\| rod shape-determining protein MreC [Photobacterium profundum SS9], gi\|4...	305.0	[0..3]	[287..2]
gi\|90326000, gi\|... - gi\|90412985\|ref\|ZP_01220983.1\| putative rod shape-determining protein MreC [Photobacterium profundum...	304.0	[0..3]	[287..2]
gi\|37199867, gi\|... - gi\|37681117\|ref\|NP_935726.1\| cell shape-determining protein [Vibrio vulnificus YJ016], gi\|37199867\|d...	301.0	[0..3]	[292..2]
gi\|84375230, gi\|... - gi\|84394128\|ref\|ZP_00992861.1\| rod shape-determining protein MreC [Vibrio splendidus 12B01], gi\|8437...	299.0	[0..3]	[288..2]
gi\|90438478, gi\|... - gi\|90580176\|ref\|ZP_01235983.1\| putative rod shape-determining protein MreC [Vibrio angustum S14], gi...	299.0	[0..3]	[276..2]
gi\|27360980, gi\|... - gi\|27364835\|ref\|NP_760363.1\| cell shape-determining protein [Vibrio vulnificus CMCP6], gi\|27360980\|g...	298.0	[0..3]	[292..2]
gi\|85834365, gi\|... - gi\|86147838\|ref\|ZP_01066144.1\| rod shape-determining protein MreC [Vibrio sp. MED222], gi\|85834365\|g...	298.0	[0..3]	[288..2]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLIFKRSS MPGLRTLIYM GLAIALIVLD QKALFFQKIR ADLALVVLPL QYLVSVPIKT  60
   61 IHWIAINVTT QQELVADNAR LRAHELLLES KLQKLLALER ENAQLRTLLK STAHVGGARV 120
  121 AVAQLLAVNL DPNLQQIIVD KGMRNHIYVG QPVLDAYGVV GQVIHAGLLT SKVMLISDPK 180
  181 SAVPVQDYRN GIRALALGMG SSGKLLLINV PDTSDIQKGD LFVSSGLGLR YPVGYPVGVV 240
  241 TELERDPTKR FATITLQPSA HLDQSQQVLM TWPNKASLAQ DVHQELNLKE KE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	2j5uA
Description:	No description for 2j5uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits