YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654730, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654730, gi|....

Description	E-value	Query Range	Subject Range
gi\|110287607, gi... - gi\|114151611\|ref\|YP_740454.1\| NADH dehydrogenase subunit 6 [Zea luxurians], gi\|110287607\|gb\|ABG65653...	205.0	[0..8]	[190..2]
gi\|114432108, gi... - gi\|115278617\|ref\|YP_762486.1\| NADH dehydrogenase subunit 6 [Tripsacum dactyloides], gi\|114432108\|gb\|...	191.0	[0..8]	[190..2]
gi\|114316131, gi... - gi\|114327957\|ref\|YP_745114.1\| NADH-quinone oxidoreductase chain J [Granulibacter bethesdensis CGDNIH...	183.0	[0..3]	[198..1]
gi\|72118086, gi\|... - gi\|73540673\|ref\|YP_295193.1\| NADH dehydrogenase subunit J [Ralstonia eutropha JMP134], gi\|72118086\|g...	182.0	[0..4]	[200..29]
gi\|68187422, gi\|... - gi\|91776404\|ref\|YP_546160.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Methylobacillus ...	176.0	[0..5]	[200..4]
gi\|77967782, gi\|... - gi\|78067037\|ref\|YP_369806.1\| NADH dehydrogenase subunit J [Burkholderia sp. 383], gi\|77967782\|gb\|ABB...	175.0	[0..5]	[200..4]
gi\|74020223, gi\|... - gi\|74020223\|ref\|ZP_00690826.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia a... gi\|170136976, gi... - gi\|170698118\|ref\|ZP_02889198.1\| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia a... gi\|171098538, gi... - gi\|171316312\|ref\|ZP_02905533.1\| NADH-ubiquinone/plastoquinone oxidoreductase chain 6 [Burkholderia a...	174.0	[0..5]	[200..4]
gi\|194558651, gi... - gi\|84355271\|ref\|ZP_00980159.1\| COG0839: NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Burkhold...	173.0	[0..9]	[200..8]
gi\|107023179, gi... - gi\|67660963\|ref\|ZP_00458296.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia c... gi\|170733600, gi... - gi\|170733600\|ref\|YP_001765547.1\| NADH dehydrogenase subunit J [Burkholderia cenocepacia MC0-3], gi\|1... gi\|116690261, gi... - gi\|67662024\|ref\|ZP_00459315.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 [Burkholderia c...	173.0	[0..5]	[200..4]
gi\|114309668, gi... - gi\|115278547\|ref\|YP_762337.1\| NADH dehydrogenase subunit 6 [Sorghum bicolor], gi\|114309668\|gb\|ABI608...	173.0	[0..8]	[191..2]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPIYEVTFF IFAAVLIAAA AMVIISRNPV HAVLFLVLAF FASAVLWMMM QAEFLALVLI  60
   61 FVYVGAVMTL FLFVVMMLNI DLSDLQQKFV RFLPFGLIAM ALLIGMMVVI VSPRHFTVAT 120
  121 AHLPHVASNF SNVKAMGSLL YVDYFYPFEI AAVILLVAII AAITLAFHGR KPNTKSQRVR 180
  181 EQLEAKKENR LRVIKMKTEN S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.356547
Match:	PF00499.11
Description:	No description for PF00499.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits