YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_COXBU.

Description	E-value	Query Range	Subject Range
gi\|94491590, gi\|... - gi\|94491590\|ref\|ZP_01298801.1\| hypothetical protein CburD_01001385 [Coxiella burnetii Dugway 7E9-12]... GRPE_COXBN - Protein GrpE OS=Coxiella burnetii (strain Dugway 5J108-111) GN=grpE PE=3 SV=1	191.0	[0..1]	[204..1]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	179.0	[0..43]	[202..44]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	178.0	[0..15]	[203..43]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	173.0	[0..16]	[203..95]
RPA0331 - RPA0331 possible heat shock protein (HSP-70 COFACTOR), grpE 358745:359371 forward MW:22207	173.0	[0..20]	[203..2]
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2	173.0	[0..20]	[203..1]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	173.0	[0..55]	[203..66]
GRPE_BARHE - Protein grpE OS=Bartonella henselae GN=grpE PE=3 SV=1 GRPE_BARHE - Protein GrpE OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=grpE PE=3 SV=1	172.0	[0..1]	[203..1]
gi\|90416141, gi\|... - gi\|90416141\|ref\|ZP_01224073.1\| heat shock protein GrpE [marine gamma proteobacterium HTCC2207], gi\|9... gi\|90416141\|ref\|... - heat shock protein GrpE [marine gamma proteobacterium HTCC2207]	172.0	[0..13]	[203..3]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	171.0	[0..19]	[203..3]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKNNPESE TKAKNKWEKV MEAEEEQEEG RGDGSQEMEP HREGLEFPSR EKLEGQLTRM  60
   61 ERKVDEYKTQ YLRAQAEMDN LRKRIEREKA DIIKFGSKQL ITDLLPVADS LIHGLESPAS 120
  121 EDPQVKSMRD GMSLTLDLLH NTLAKHGVQV INPNPGDPFD PALHEAMSVQ AVPDAKPDTI 180
  181 IQVLQKGYQL NGRVLRAARV IVAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits