YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541848, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541848, gi|....

Description	E-value	Query Range	Subject Range
gi\|42409790, gi\|... - gi\|42520053\|ref\|NP_965968.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia end...	198.0	[0..8]	[199..12]
gi\|99036052 - gi\|99036052\|ref\|ZP_01315088.1\| hypothetical protein Wendoof_01000058 [Wolbachia endosymbiont of Dros...	197.0	[0..8]	[199..12]
gi\|225629957, gi... - gi\|225629957\|ref\|YP_002726748.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia... gi\|58534457, gi\|... - gi\|58699029\|ref\|ZP_00373874.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia e...	197.0	[0..8]	[199..12]
gi\|68193559, gi\|... - gi\|69275119\|ref\|ZP_00611031.1\| Exopolysaccharide synthesis, ExoD [Mesorhizobium sp. BNC1], gi\|681935...	192.0	[0..8]	[199..31]
gi\|83594201, gi\|... - gi\|83594201\|ref\|YP_427953.1\| exopolysaccharide synthesis, ExoD [Rhodospirillum rubrum ATCC 11170], g...	191.0	[0..6]	[200..21]
gi\|30248801, gi\|... - gi\|30248801\|ref\|NP_840871.1\| hypothetical protein NE0797 [Nitrosomonas europaea ATCC 19718], gi\|3018...	191.0	[0..5]	[192..3]
gi\|58696737, gi\|... - gi\|58696737\|ref\|ZP_00372280.1\| exopolysaccharide synthesis protein ExoD-related protein [Wolbachia e...	191.0	[0..6]	[199..10]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEINHARRS SDILKEIAQH KPDGKITYHD ILQKLGYRAF GLVLLFFALP SALPFSAIPG  60
   61 VSFIFSIPIA IFAFQMIIAQ KALWLPKFIG ERTIPYEKVS KIIHKVSPFL IKIEHLLKPR 120
  121 LYFMTKGFMK IMSGVVLFCL AIFLTLPIPF SNFLFALLII VISLGLIEKD GLFIILGYIG 180
  181 TALYISFMYV FIFGAIKALF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.244125
Match:	PF06055.3
Description:	No description for PF06055.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits